CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
golgi 2
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51089	Canola	golgi, mitochondrion	94.94	94.94
AT2G19160.1	Thale cress	golgi, mitochondrion	82.78	82.99
CDY66853	Canola	mitochondrion	83.04	82.83
CDY03361	Canola	mitochondrion	82.28	82.28
CDY12850	Canola	mitochondrion	82.28	81.66
CDX83505	Canola	mitochondrion	82.28	81.66
CDY01412	Canola	mitochondrion	82.28	81.45
CDY03552	Canola	golgi, mitochondrion	72.66	71.57
CDY30178	Canola	mitochondrion	71.39	70.15
CDY46724	Canola	mitochondrion	70.63	69.23
CDX89388	Canola	cytosol	35.95	62.28
KRH19073	Soybean	golgi	61.01	61.32
Solyc07g008940.2.1	Tomato	golgi	58.99	59.29
PGSC0003DMT400073984	Potato	golgi	58.23	58.52
HORVU2Hr1G100480.3	Barley	cytosol	47.59	57.85
KRH02808	Soybean	golgi	61.27	57.62
CDY38285	Canola	golgi	56.46	57.33
CDX94406	Canola	golgi	54.94	57.26
CDY49466	Canola	cytosol	37.22	57.2
CDY25922	Canola	golgi	56.2	57.07
CDX88613	Canola	golgi	55.95	56.81
VIT_11s0103g00490.t01	Wine grape	golgi, plastid	57.72	56.58
CDY11878	Canola	golgi	55.7	56.56
CDY42774	Canola	mitochondrion	53.67	55.94
CDX92736	Canola	mitochondrion	53.42	55.67
CDY14193	Canola	mitochondrion	73.16	55.15
Zm00001d024348_P002	Maize	mitochondrion	51.65	55.14
CDY28259	Canola	golgi	52.15	54.79
CDX68738	Canola	golgi	52.15	54.79
KXG24737	Sorghum	golgi	52.91	54.57
Zm00001d002382_P002	Maize	golgi, mitochondrion	53.42	54.52
TraesCS2B01G452200.4	Wheat	mitochondrion	52.41	54.47
TraesCS2D01G428700.2	Wheat	mitochondrion	52.41	54.47
Zm00001d026261_P001	Maize	golgi, mitochondrion	52.66	54.31
EES12818	Sorghum	golgi	53.16	54.26
TraesCS2A01G430900.2	Wheat	mitochondrion	51.9	53.11
CDY66012	Canola	mitochondrion	48.35	52.33
Os08t0225400-01	Rice	cytosol, golgi	51.9	49.64
CDY57290	Canola	cytosol	41.27	47.11
CDX80552	Canola	cytosol	15.19	39.22
CDX73016	Canola	mitochondrion	32.91	37.46
CDX78440	Canola	cytosol	30.63	37.46
CDX70417	Canola	cytosol	26.84	35.33
CDY43927	Canola	golgi	34.68	35.22
CDX97139	Canola	golgi	34.18	34.97
CDX97141	Canola	golgi	34.18	34.97
CDX69735	Canola	golgi	33.92	34.72
CDX87842	Canola	golgi	34.18	34.7
CDY31036	Canola	golgi	32.66	34.22
CDY24895	Canola	mitochondrion	31.9	33.78
CDY08638	Canola	mitochondrion	32.41	33.77
CDY51451	Canola	golgi	31.9	33.07
CDY19328	Canola	golgi, mitochondrion	31.65	33.07
CDX94911	Canola	golgi	32.15	32.99
CDX97140	Canola	golgi	34.18	32.93
CDX88209	Canola	golgi	29.11	32.86
CDY20644	Canola	golgi	32.41	32.82
CDX93443	Canola	golgi	31.9	32.81
CDY56916	Canola	cytosol, golgi, plasma membrane, plastid	31.39	32.55
CDX78674	Canola	cytosol, golgi, plasma membrane	32.66	32.01
CDX69574	Canola	mitochondrion	29.62	31.97
CDX78439	Canola	golgi	32.41	31.92
CDX70676	Canola	cytosol, golgi, nucleus	32.41	31.84
CDY09869	Canola	mitochondrion	29.37	31.69
CDY31228	Canola	golgi	29.62	31.62
CDY34605	Canola	golgi	29.87	31.22
CDY20597	Canola	golgi	26.84	31.18
CDY21023	Canola	golgi	29.62	31.12
CDX69465	Canola	golgi	31.9	31.11
CDX96026	Canola	golgi	30.38	30.3
CDY26504	Canola	cytosol	11.65	30.26
CDX96025	Canola	golgi, vacuole	31.39	29.81
CDX81507	Canola	golgi	30.89	29.76
CDY44904	Canola	golgi	30.63	29.51
CDY59035	Canola	golgi	31.39	29.45
CDX70416	Canola	golgi	31.65	28.6
CDY70337	Canola	golgi	24.05	25.47
CDY66259	Canola	cytosol	26.33	24.19
CDX97918	Canola	golgi	30.13	18.86
CDX73017	Canola	cytosol	0.51	14.29

Protein Annotations

EnsemblPlants:CDX82625	EnsemblPlantsGene:GSBRNA2T00137832001	GO:A0A078D0M4	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0008375	GO:GO:0016020	GO:GO:0016740	InterPro:Glyco_trans_14	PANTHER:PTHR31042	PANTHER:PTHR31042:SF1
PFAM:PF02485	ProteinID:CDX82625	ProteinID:CDX82625.1	TMHMM:TMhelix	UniParc:UPI0004EEB114	MapMan:35.1

Description

BnaC07g02410D

Coordinates

chrLK031829:+:631054..634501

Molecular Weight (calculated)

45753.2 Da

IEP (calculated)

8.933

GRAVY (calculated)

-0.266

Length

395 amino acids

Sequence
(BLAST)

001: MKAIRGWRLG RTSHMPGAHH RARTEKPVWI IAVVSLIIMF VIGAYMFPHH SKAACYMLSS KGCKGLTDWL PTSPRKFSYD EITARVVTRE VLSSPLVIKK
101: SSKIAFMFLT PGTLPFEKLW DLFFRGHEGK LSVYIHASKD TPVHTSRYFI NRDIPSDEVV WGTISMIDAE RRLLANALRD PENQQFVLLS DSCVPLRSFE
201: YMYNYMMFSN VSYVDCFYDP GRHGTGRHTD HMLPEIPKED FRKGSQWFSI KRQHAVITAA DSLYYSKFRD YCGPGVESNK YCIADEHYLP TLFHMLDPGG
301: IANWTLTYVD WSEKKWHPKT YMPEDITHEL LMNLMSIDAV SHVTSEKTGV VTWTQCMWNG IKRPCYLFGR KFHAHTLDKL IDVFSNYTTI LHKPH

Best Arabidopsis Sequence Match ( AT2G19160.1 )
(BLAST)

001: MKAIKGWRLG KINYMQSLPG ARHRAPTRKP IWIIAVLSLI AMFVIGAYMF PHHSKAACYM FSSKGCKGLT DWLPPSLREY SDDEIAARVV ISEILSSPRV
101: IKKSSKIAFM FLTPGTLPFE KLWDLFFQGH EGKFSVYIHA SKDTPVHTSR YFLNREIRSD EVVWGRISMI DAERRLLTNA LRDPENQQFV LLSDSCVPLR
201: SFEYMYNYMM HSNVSYVDCF DDPGPHGTGR HMDHMLPEIP REDFRKGAQW FSMKRQHAVV TVADNLYYSK FRDYCGPGVE GNKNCIADEH YLPTFFYMLD
301: PTGIANWTVT YVDWSERKWH PRKYMPEDIT LELIKNISSI DAVSRVTSEK NGVVSWTHCM WNGIKRPCYL FGRKFHADTL DKLMELFPNY TSIV

Arabidopsis Description

At2g19160 [Source:UniProtKB/TrEMBL;Acc:Q8W460]
SUBAcon: [golgi,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.