CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 4
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra010446.1-P	Field mustard	mitochondrion	100.0	93.83
CDY49466	Canola	cytosol	66.03	93.77
CDX89388	Canola	cytosol	50.68	81.14
CDX94406	Canola	golgi	79.73	76.78
AT4G25870.1	Thale cress	cytosol, golgi, mitochondrion, plastid	81.37	76.35
CDY42774	Canola	mitochondrion	77.26	74.41
CDX92736	Canola	mitochondrion	76.71	73.88
CDY25922	Canola	golgi	68.22	64.01
CDY38285	Canola	golgi	67.95	63.75
CDX88613	Canola	golgi	67.95	63.75
CDY11878	Canola	golgi	67.67	63.5
CDY57290	Canola	cytosol	58.9	62.14
CDY03552	Canola	golgi, mitochondrion	55.89	50.87
CDY46724	Canola	mitochondrion	56.16	50.87
CDY30178	Canola	mitochondrion	55.89	50.75
CDY03361	Canola	mitochondrion	53.97	49.87
Solyc07g008940.2.1	Tomato	golgi	53.7	49.87
CDY12850	Canola	mitochondrion	54.25	49.75
CDX83505	Canola	mitochondrion	54.25	49.75
CDY66853	Canola	mitochondrion	53.97	49.75
CDY01412	Canola	mitochondrion	54.25	49.62
PGSC0003DMT400073984	Potato	golgi	53.42	49.62
KRH19073	Soybean	golgi	52.6	48.85
VIT_11s0103g00490.t01	Wine grape	golgi, plastid	53.42	48.39
CDX82625	Canola	mitochondrion	52.33	48.35
HORVU2Hr1G100480.3	Barley	cytosol	42.74	48.0
CDY51089	Canola	golgi, mitochondrion	51.78	47.85
Zm00001d026261_P001	Maize	golgi, mitochondrion	49.32	47.0
Zm00001d024348_P002	Maize	mitochondrion	46.85	46.22
KRH02808	Soybean	golgi	52.6	45.71
CDX68738	Canola	golgi	46.85	45.48
CDY28259	Canola	golgi	46.85	45.48
EES12818	Sorghum	golgi	48.22	45.48
KXG24737	Sorghum	golgi	47.12	44.91
Zm00001d002382_P002	Maize	golgi, mitochondrion	46.85	44.19
TraesCS2D01G428700.2	Wheat	mitochondrion	44.93	43.16
TraesCS2B01G452200.4	Wheat	mitochondrion	44.38	42.63
TraesCS2A01G430900.2	Wheat	mitochondrion	44.11	41.71
Os08t0225400-01	Rice	cytosol, golgi	46.85	41.4
CDY14193	Canola	mitochondrion	56.44	39.31
CDX80552	Canola	cytosol	16.44	39.22
CDX78440	Canola	cytosol	29.32	33.13
CDX73016	Canola	mitochondrion	30.41	31.99
CDY51451	Canola	golgi	31.51	30.18
CDY20597	Canola	golgi	27.95	30.0
CDX69735	Canola	golgi	31.51	29.79
CDY31036	Canola	golgi	30.41	29.44
CDX93443	Canola	golgi	30.96	29.43
CDX94911	Canola	golgi	30.96	29.35
CDX70417	Canola	cytosol	24.11	29.33
CDX78439	Canola	golgi	32.05	29.18
CDY56916	Canola	cytosol, golgi, plasma membrane, plastid	30.41	29.13
CDY19328	Canola	golgi, mitochondrion	30.14	29.1
CDX97141	Canola	golgi	30.68	29.02
CDX97139	Canola	golgi	30.68	29.02
CDY43927	Canola	golgi	30.68	28.79
CDY20644	Canola	golgi	30.68	28.72
CDX87842	Canola	golgi	30.41	28.53
CDX96025	Canola	golgi, vacuole	31.51	27.64
CDY59035	Canola	golgi	31.78	27.55
CDX88209	Canola	golgi	26.3	27.43
CDX78674	Canola	cytosol, golgi, plasma membrane	30.14	27.3
CDX97140	Canola	golgi	30.41	27.07
CDX70676	Canola	cytosol, golgi, nucleus	29.04	26.37
CDY26504	Canola	cytosol	10.96	26.32
CDX70416	Canola	golgi	31.51	26.32
CDX96026	Canola	golgi	28.49	26.26
CDX69574	Canola	mitochondrion	26.3	26.23
CDX69465	Canola	golgi	28.77	25.93
CDY44904	Canola	golgi	29.04	25.85
CDX81507	Canola	golgi	29.04	25.85
CDY09869	Canola	mitochondrion	25.75	25.68
CDY24895	Canola	mitochondrion	26.03	25.47
CDY08638	Canola	mitochondrion	26.3	25.33
CDY34605	Canola	golgi	25.48	24.6
CDY21023	Canola	golgi	24.93	24.2
CDY31228	Canola	golgi	24.38	24.05
CDY70337	Canola	golgi	22.47	21.98
CDY66259	Canola	cytosol	21.37	18.14
CDX97918	Canola	golgi	28.22	16.32
CDX73017	Canola	cytosol	0.0	0.0

Protein Annotations

MapMan:35.1	GO:A0A078JKX9	UniProt:A0A078JKX9	EnsemblPlants:CDY66012	ProteinID:CDY66012	ProteinID:CDY66012.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0008375	GO:GO:0016020	GO:GO:0016021
GO:GO:0016740	EnsemblPlantsGene:GSBRNA2T00051170001	InterPro:Glyco_trans_14	PFAM:PF02485	PANTHER:PTHR31042	PANTHER:PTHR31042:SF1
TMHMM:TMhelix	UniParc:UPI0004EE81C2	SEG:seg	:	:	:

Description

BnaA08g30840DBnaA08g30840D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JKX9]

Coordinates

chrLK035043:-:16793..18887

Molecular Weight (calculated)

42257.7 Da

IEP (calculated)

8.738

GRAVY (calculated)

-0.307

Length

365 amino acids

Sequence
(BLAST)

001: MSYKEQKYLQ RPRHHTSLKK PLCVVLTVSV ISMLLVCTHL FPRHGKSSSC HGLSSSRGCE NAISALLPAH IRKLTIKEIA ARAVVRDILR TPSLVTQNSK
101: IAFLFLTHAT LPFEELWDEF FKGHEGKFSI YIYTFKERPV HISPHFYDRE IHSDKNQHFV LLSESCIPLH TFDYTYRYLL YSNVSFIESF VDPGPHGTGR
201: HMEHMLPEIT KEDFRKGAQW FTMKRQHAVI VMADSLYHSK FSKYCGPGLE ANKSCTADEH YLPTFFSKVD PMGISNWSVT YVDWSKRRRH PKTYRAHEIS
301: LEFMNSVSSE EMSVHVTSLG EHGELHWPCT WNGITRPCYL FARKFHPDAL DTLVNLFPNY TSPVV

Best Arabidopsis Sequence Match ( AT4G25870.1 )
(BLAST)

001: MGETQKILQG PRHHTSLKKP LWVVLTVSVT SMLLICTHMY PKHGKSSSCH GLYSTRGCED ALSKWLPVHV RKFTDEEIAA RAVVRDILRT PPFITNNSKI
101: AFLFLTPGTL PFEKLWDEFF KGHEGKFSIY IHPSKERPVH ISRHFSDREI HSDEVTWGRI SMVDAEKRLL VSALEDPDNQ HFVLVSESCI PLHTFDYTYR
201: YLLYSNVSFI ESFVDPGPHG TGRHMEHMLP EIAKEDFRKG AQWFTMKRQH AIIVMADGLY YSKFREYCGP GIEADKNCIA DEHYLPTFFN MIDPMGISNW
301: SVTFVDWSER RWHPKTYGGN EISLEFMKNV TSEDMSVHVT SVGKHGDELH WPCTWNGIKR PCYLFARKFH PDTLDTLVNL FPNYTNTAV

Arabidopsis Description

At4g25870 [Source:UniProtKB/TrEMBL;Acc:Q9SVZ8]
SUBAcon: [cytosol,plastid,golgi,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.