CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24895	Canola	mitochondrion	96.04	97.59
Bra034487.1-P	Field mustard	mitochondrion	95.78	97.32
AT1G62305.1	Thale cress	golgi	84.17	84.39
CDY31228	Canola	golgi	67.55	69.19
CDY21023	Canola	golgi	68.07	68.62
CDY34605	Canola	golgi	63.06	63.23
Solyc02g036250.1.1	Tomato	cytosol	25.59	61.78
VIT_10s0116g00980.t01	Wine grape	golgi	61.74	61.58
KRH11480	Soybean	mitochondrion	58.58	58.89
PGSC0003DMT400042390	Potato	golgi	57.52	58.13
PGSC0003DMT400055283	Potato	golgi	54.88	55.91
Solyc02g080970.2.1	Tomato	plastid	57.52	55.75
GSMUA_Achr3P28930_001	Banana	golgi	54.35	53.79
KRH36494	Soybean	mitochondrion	58.31	52.49
HORVU3Hr1G065000.4	Barley	cytosol	44.59	52.32
GSMUA_Achr9P21910_001	Banana	golgi	52.77	51.81
TraesCS3D01G258800.1	Wheat	golgi, mitochondrion, plastid	50.66	48.73
TraesCS3A01G258700.1	Wheat	golgi, mitochondrion, plastid	50.4	48.6
CDX69574	Canola	mitochondrion	46.7	48.36
Zm00001d043768_P001	Maize	golgi, mitochondrion, plastid	49.6	48.08
Os01t0695200-01	Rice	plastid	45.91	47.93
CDY09869	Canola	mitochondrion	46.17	47.81
KXG33181	Sorghum	golgi, mitochondrion, plastid	49.08	47.57
TraesCS3B01G291600.1	Wheat	plastid	50.92	46.62
CDY66259	Canola	cytosol	50.92	44.88
CDX89388	Canola	cytosol	21.11	35.09
CDY49466	Canola	cytosol	22.69	33.46
CDX78440	Canola	cytosol	28.5	33.44
CDX80552	Canola	cytosol	13.19	32.68
CDY51089	Canola	golgi, mitochondrion	34.04	32.66
CDX82625	Canola	mitochondrion	33.77	32.41
CDX87842	Canola	golgi	33.25	32.39
CDY43927	Canola	golgi	33.25	32.39
CDY12850	Canola	mitochondrion	33.77	32.16
CDX83505	Canola	mitochondrion	33.77	32.16
CDY31036	Canola	golgi	31.93	32.1
CDY01412	Canola	mitochondrion	33.77	32.08
CDY03361	Canola	mitochondrion	33.25	31.9
CDY66853	Canola	mitochondrion	33.25	31.82
CDY46724	Canola	mitochondrion	33.77	31.76
CDX70417	Canola	cytosol	25.07	31.67
CDY30178	Canola	mitochondrion	33.51	31.59
CDX73016	Canola	mitochondrion	28.76	31.41
CDY03552	Canola	golgi, mitochondrion	32.98	31.17
CDY20644	Canola	golgi	31.93	31.03
CDX68738	Canola	golgi	30.61	30.85
CDY28259	Canola	golgi	30.61	30.85
CDX69735	Canola	golgi	31.4	30.83
CDY56916	Canola	cytosol, golgi, plasma membrane, plastid	30.87	30.71
CDY51451	Canola	golgi	30.87	30.71
CDY19328	Canola	golgi, mitochondrion	30.61	30.69
CDX94911	Canola	golgi	31.13	30.65
CDX94406	Canola	golgi	30.61	30.61
CDX93443	Canola	golgi	30.87	30.47
CDX92736	Canola	mitochondrion	30.34	30.34
CDY42774	Canola	mitochondrion	30.08	30.08
CDX97139	Canola	golgi	30.61	30.05
CDX97141	Canola	golgi	30.61	30.05
CDY11878	Canola	golgi	30.61	29.82
CDY25922	Canola	golgi	30.61	29.82
CDX88613	Canola	golgi	30.61	29.82
CDX78439	Canola	golgi	31.4	29.68
CDY38285	Canola	golgi	30.34	29.56
CDX78674	Canola	cytosol, golgi, plasma membrane	31.13	29.28
CDX70676	Canola	cytosol, golgi, nucleus	30.87	29.1
CDX96026	Canola	golgi	30.34	29.04
CDX97140	Canola	golgi	30.61	28.29
CDY44904	Canola	golgi	30.61	28.29
CDX96025	Canola	golgi, vacuole	30.87	28.12
CDX81507	Canola	golgi	30.34	28.05
CDX69465	Canola	golgi	29.55	27.65
CDY59035	Canola	golgi	30.61	27.55
CDX70416	Canola	golgi	31.66	27.46
CDY20597	Canola	golgi	24.54	27.35
CDY66012	Canola	mitochondrion	25.33	26.3
CDX88209	Canola	golgi	24.01	26.0
CDY57290	Canola	cytosol	22.96	25.14
CDY70337	Canola	golgi	24.54	24.93
CDY14193	Canola	mitochondrion	33.25	24.05
CDY26504	Canola	cytosol	9.5	23.68
CDX97918	Canola	golgi	29.02	17.43
CDX73017	Canola	cytosol	0.26	7.14

Protein Annotations

EnsemblPlants:CDY08638	EnsemblPlantsGene:GSBRNA2T00000457001	GO:A0A078FA10	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0008375	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	InterPro:Glyco_trans_14	PANTHER:PTHR31042
PANTHER:PTHR31042:SF2	PFAM:PF02485	ProteinID:CDY08638	ProteinID:CDY08638.1	SEG:seg	TMHMM:TMhelix
UniParc:UPI0004EAB449	UniProt:A0A078FA10	MapMan:35.1	:	:	:

Description

BnaC04g19470DBnaC04g19470D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FA10]

Coordinates

chrLK031987:-:326511..329197

Molecular Weight (calculated)

44073.0 Da

IEP (calculated)

10.042

GRAVY (calculated)

-0.377

Length

379 amino acids

Sequence
(BLAST)

001: MARRSPPQLH TSRRGVVSFR WKLITALSAS LCVLALFSIY HRQSRPVPSL SAARSRIPLH KYSGDRPKIA FLFLARHDLP LDFLWDRFFK GGDERNLSIY
101: VHSTPGFVFD EGTTRSHFFH NRQLKNSIEV VWGEASMIAA ERLLLASALE EPSNQRFVLL SDSCVPLYDF GYIYTYLMSS PKSFVDSFLD TKDQRYTMKM
201: FPVIPKEKWR KGSQWISLIR SHAEVIVNDD TVFPVFQKFC KRSLPLDPSN KWLYLKHRRH NCIPDEHYVQ TLLTMRGLKS EMERRTVTYT TWNLLAKKAE
301: AKSWHPLTFT SDNSGAKEIE EIKKINHVYY ETEYRTEWCR ANSKPVPCFL FARKFTRGAA MRLLSEGLVE SSTDTTTTS

Best Arabidopsis Sequence Match ( AT1G62305.1 )
(BLAST)

001: MPRLPSSRRG VVWFRWKILI TISTALCILA LFCINRQSNS TATTTTLSSS LSVARSRIPL VKYSGDRPKL AFLFLARRDL PLDFLWDRFF KSADQRNFSI
101: YVHSIPGFVF DESSTRSHFF YNRQLKNSIE VVWGESSMIA AERLLLASAL EDPSNQRFVL LSDSCVPLYD FGYIYRYLVS SPKSFVDSFL DKDNRYTMKM
201: FPVIRKEKWR KGSQWISLIR SHAEVIVNDD TVFPVFQKFC KRSLPLDPRK NWLYLKKRRH NCIPDEHYVQ TLLTMRGLEN EMERRTVTYT TWNLSAKKAE
301: AKSWHPLTFT SDNCGPEEIE GIKKINHVYY ESEYRTEWCR ANSKPVPCFL FARKFTRGAA MRLLSEGLIE SSIDTTTF

Arabidopsis Description

At1g62305 [Source:UniProtKB/TrEMBL;Acc:Q6DST3]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.