Factsheet for PGSC0003DMT400042390

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

extracellular 6
golgi 8
plasma membrane 5
endoplasmic reticulum 5
vacuole 6
plastid 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	extracellular, golgi, nucleus, plastid, vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g080970.2.1	Tomato	plastid	97.07	93.09
VIT_10s0116g00980.t01	Wine grape	golgi	71.2	70.26
PGSC0003DMT400055283	Potato	golgi	67.2	67.74
KRH11480	Soybean	mitochondrion	65.07	64.72
AT1G62305.1	Thale cress	golgi	60.0	59.52
KRH36494	Soybean	mitochondrion	65.87	58.67
Bra034487.1-P	Field mustard	mitochondrion	57.6	57.91
CDY24895	Canola	mitochondrion	57.6	57.91
CDY08638	Canola	mitochondrion	58.13	57.52
CDY31228	Canola	golgi	55.73	56.49
CDY21023	Canola	golgi	56.53	56.38
HORVU3Hr1G065000.4	Barley	cytosol	48.53	56.35
AT1G11940.1	Thale cress	golgi	57.33	56.14
Bra016802.1-P	Field mustard	golgi	56.0	55.85
GSMUA_Achr3P28930_001	Banana	golgi	54.4	53.26
GSMUA_Achr9P21910_001	Banana	golgi	54.13	52.59
Os01t0695200-01	Rice	plastid	50.4	52.07
CDY34605	Canola	golgi	51.73	51.32
TraesCS3A01G258700.1	Wheat	golgi, mitochondrion, plastid	53.07	50.64
TraesCS3D01G258800.1	Wheat	golgi, mitochondrion, plastid	53.07	50.51
Bra031797.1-P	Field mustard	cytosol	44.53	49.41
KXG33181	Sorghum	golgi, mitochondrion, plastid	50.67	48.59
Zm00001d043768_P001	Maize	golgi, mitochondrion, plastid	50.67	48.59
TraesCS3B01G291600.1	Wheat	plastid	53.07	48.07
PGSC0003DMT400001379	Potato	mitochondrion	46.67	41.77
PGSC0003DMT400037735	Potato	cytosol	21.87	39.81
CDY66259	Canola	cytosol	44.53	38.84
PGSC0003DMT400035937	Potato	mitochondrion	30.13	38.44
PGSC0003DMT400014396	Potato	cytosol	28.8	36.49
PGSC0003DMT400012489	Potato	golgi	32.8	32.98
PGSC0003DMT400006434	Potato	golgi, nucleus, plasma membrane	31.47	30.57
PGSC0003DMT400037733	Potato	golgi	31.2	30.39
PGSC0003DMT400073984	Potato	golgi	31.73	30.28
PGSC0003DMT400063986	Potato	golgi	32.0	30.23
PGSC0003DMT400013770	Potato	golgi	31.73	28.88

Protein Annotations

EnsemblPlants:PGSC0003DMT400042390	EnsemblPlantsGene:PGSC0003DMG400016437	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0008375
GO:GO:0016020	GO:GO:0016740	InterPro:Glyco_trans_14	PANTHER:PTHR31042	PANTHER:PTHR31042:SF2	PFAM:PF02485
PGSC:PGSC0003DMG400016437	SEG:seg	TMHMM:TMhelix	UniParc:UPI000295346B	UniProt:M1BCY5	MapMan:35.1

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400016437]

Coordinates

chr2:-:36648396..36655649

Molecular Weight (calculated)

43336.0 Da

IEP (calculated)

9.475

GRAVY (calculated)

-0.225

Length

375 amino acids

Sequence
(BLAST)

001: MSVRNVLWLW WKLLVLVSLT LCVLAFLKLQ NYSLSDSELS SSTSSISSRS RAVDYTGNPK VAFLFLVRRN LPLDFLWGNF FENADTGNFS IYVHSEPGFV
101: FDESTTRSTF FFNRQLTNSI KVAWGESSMI QAEKLLLGAA LDDPANQRFV LLSDSCVPLY NFSFIYNYLM ASPRSFVDSF LDKKDVRYNP RMSPYIPMRK
201: WRKGSQWITL IRKHAEVVAD DDAVFPVFKM FCKRRPPLEA SKGKKNIKLQ KQHNCIPDEH YVQTLLAIHG FEGELERRTI TYTEWNESVT NMEKKGWHPI
301: TFSYADAGPV QIKRIKDIRN VYYESEYRTE WCRNNSTLAP CFLIARKFSR GAAMRLLSEG IVSPFDASSI MNLTP

Best Arabidopsis Sequence Match ( AT1G62305.1 )
(BLAST)

001: MPRLPSSRRG VVWFRWKILI TISTALCILA LFCINRQSNS TATTTTLSSS LSVARSRIPL VKYSGDRPKL AFLFLARRDL PLDFLWDRFF KSADQRNFSI
101: YVHSIPGFVF DESSTRSHFF YNRQLKNSIE VVWGESSMIA AERLLLASAL EDPSNQRFVL LSDSCVPLYD FGYIYRYLVS SPKSFVDSFL DKDNRYTMKM
201: FPVIRKEKWR KGSQWISLIR SHAEVIVNDD TVFPVFQKFC KRSLPLDPRK NWLYLKKRRH NCIPDEHYVQ TLLTMRGLEN EMERRTVTYT TWNLSAKKAE
301: AKSWHPLTFT SDNCGPEEIE GIKKINHVYY ESEYRTEWCR ANSKPVPCFL FARKFTRGAA MRLLSEGLIE SSIDTTTF

Arabidopsis Description

At1g62305 [Source:UniProtKB/TrEMBL;Acc:Q6DST3]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.