Factsheet for PGSC0003DMT400014396

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g119260.2.1	Tomato	golgi, nucleus, plasma membrane	94.93	65.96
GSMUA_Achr6P09800_001	Banana	cytosol	56.42	60.07
PGSC0003DMT400037735	Potato	cytosol	40.2	57.77
PGSC0003DMT400035937	Potato	mitochondrion	56.08	56.46
TraesCS1D01G394500.1	Wheat	mitochondrion	54.39	55.14
PGSC0003DMT400013770	Potato	golgi	76.35	54.85
HORVU1Hr1G085260.1	Barley	cytosol	43.92	54.17
Bra015963.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	56.42	47.71
CDX73016	Canola	mitochondrion	55.74	47.55
PGSC0003DMT400037733	Potato	golgi	60.81	46.75
PGSC0003DMT400012489	Potato	golgi	53.72	42.63
PGSC0003DMT400063986	Potato	golgi	55.07	41.06
PGSC0003DMT400006434	Potato	golgi, nucleus, plasma membrane	52.7	40.41
AT1G73810.1	Thale cress	golgi, nucleus, peroxisome	55.07	39.0
Os02t0327500-01	Rice	golgi	55.74	37.59
Zm00001d016103_P001	Maize	golgi, plasma membrane, plastid	54.39	36.1
Zm00001d053393_P002	Maize	golgi, plastid	54.39	35.86
TraesCS1B01G413900.1	Wheat	golgi, mitochondrion	55.41	35.34
TraesCS1A01G386500.1	Wheat	golgi, mitochondrion	55.74	35.33
PGSC0003DMT400073984	Potato	golgi	45.61	34.35
OQU84731	Sorghum	plastid	55.41	34.17
PGSC0003DMT400055283	Potato	golgi	37.16	29.57
HORVU1Hr1G085240.4	Barley	golgi, mitochondrion, plastid	45.95	28.94
PGSC0003DMT400042390	Potato	golgi	36.49	28.8
PGSC0003DMT400001379	Potato	mitochondrion	36.49	25.78
CDX73017	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400014396	EnsemblPlantsGene:PGSC0003DMG400005648	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0008375
GO:GO:0016020	GO:GO:0016740	InterPro:Glyco_trans_14	PANTHER:PTHR31042	PANTHER:PTHR31042:SF7	PFAM:PF02485
PGSC:PGSC0003DMG400005648	SEG:seg	UniParc:UPI000295E9D0	UniProt:M1A458	MapMan:35.1	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400005648]

Coordinates

chr3:-:58693990..58697505

Molecular Weight (calculated)

34734.2 Da

IEP (calculated)

10.036

GRAVY (calculated)

-0.398

Length

296 amino acids

Sequence
(BLAST)

001: MKDEELISRA MMVPRVSDLP FKRKPKIAFM FLARGSLPLA PLWERFFQGH EGLYSIYIHS QPSFNGTAPQ EGPIFHGRRV ASKKVEWGKF NMVEAERRLL
101: ANALLDLSNE RFVLLSESCI PLYNFTTIYN YIINSANTFM ESYDLISPVG RGRYSKKMKP LVTLAQWRKG SQWFEVDREI AMDIISDQKY SHLFKRFCRP
201: ACYSDEHYLP TFVTMKYWWK NENRTLTWVD WAKGGPHPTK FIRPEVTEDL LNGMRNGTKC EYNGRPSNMC YLFARKFLPS TLDRLLRFAP KIMKFG

Best Arabidopsis Sequence Match ( AT1G68390.1 )
(BLAST)

001: MKNQKDQNSS SLSSSSPSLT TKLLNAQYHH FLNLLSYSLI LCCGIIIGIL LHSSLQNFSS NSSLSIQRIS QLFIVSSLPP SPPPPPPPSP PSEPEQNGLK
101: SFIEPPEKLM HDMEDEELLW RASMAPKIKN YPFPRTPKVA FMFMTKGHLP LARLWERFFR GHEGLFTIYV HSYPSYNQSD PEDSVFRGRH IPSKRVDWGY
201: VNMVEAEQRL LANALLDISN ERFVLLSESC IPLFNFTTVY SYLINSTQTH VESYDQLGGV GRGRYSPLMQ PHVQLRHWRK GSQWIEVDRA MALEIISDRI
301: YWPLFYSYCH HGCYADEHYI PTLLNIKSSL KRRNSNRTLT WVDWSKGGPH PNRFIRHEVT AEFMENLRSG GECLYNGEET NICYLFARKF LPTALDRLLR
401: LSRTVLHF

Arabidopsis Description

Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q9M9C4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.