Factsheet for PGSC0003DMT400001379

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
golgi 3
nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	golgi
Plant-mPloc:	nucleus, plastid
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g086550.2.1	Tomato	golgi, mitochondrion	84.96	95.19
VIT_14s0066g00820.t01	Wine grape	cytosol, golgi, mitochondrion, plastid	60.86	78.7
KRH56549	Soybean	golgi	60.38	69.51
KRG93228	Soybean	golgi	60.14	68.11
CDY09869	Canola	mitochondrion	58.0	66.39
GSMUA_Achr2P14170_001	Banana	mitochondrion	57.76	65.94
CDX69574	Canola	mitochondrion	57.28	65.57
Bra008752.1-P	Field mustard	mitochondrion	57.04	65.3
AT5G14550.1	Thale cress	mitochondrion	58.47	64.99
EES19116	Sorghum	golgi	54.89	60.37
TraesCS1D01G115700.1	Wheat	golgi	53.94	58.1
TraesCS1A01G114000.1	Wheat	golgi	53.94	57.95
TraesCS1B01G134300.1	Wheat	golgi	53.94	57.95
Os05t0170000-02	Rice	golgi	54.65	57.39
HORVU0Hr1G039960.6	Barley	golgi	32.7	52.69
PGSC0003DMT400042390	Potato	golgi	41.77	46.67
PGSC0003DMT400055283	Potato	golgi	40.1	45.16
Zm00001d009810_P003	Maize	mitochondrion, vacuole	54.89	43.31
PGSC0003DMT400037735	Potato	cytosol	18.85	38.35
PGSC0003DMT400035937	Potato	mitochondrion	25.78	36.73
PGSC0003DMT400014396	Potato	cytosol	25.78	36.49
PGSC0003DMT400012489	Potato	golgi	28.16	31.64
PGSC0003DMT400073984	Potato	golgi	29.12	31.04
PGSC0003DMT400006434	Potato	golgi, nucleus, plasma membrane	28.16	30.57
PGSC0003DMT400063986	Potato	golgi	28.16	29.72
PGSC0003DMT400037733	Potato	golgi	25.78	28.05
PGSC0003DMT400013770	Potato	golgi	27.21	27.67

Protein Annotations

EnsemblPlants:PGSC0003DMT400001379	EnsemblPlantsGene:PGSC0003DMG400000514	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0008375
GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	InterPro:Glyco_trans_14	PANTHER:PTHR31042	PANTHER:PTHR31042:SF6
PFAM:PF02485	PGSC:PGSC0003DMG400000514	TMHMM:TMhelix	UniParc:UPI000296ACBC	UniProt:M0ZIC8	MapMan:35.1

Description

BC10 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400000514]

Coordinates

chr2:+:47282207..47290039

Molecular Weight (calculated)

49485.9 Da

IEP (calculated)

8.659

GRAVY (calculated)

-0.348

Length

419 amino acids

Sequence
(BLAST)

001: MGLKLIRRSN SQKSQHRWKI KVFAMMLFIF FFGTLVLMET QYNRIRMLAL LSAPQVQNPK IAFLFIARNR LPLDIVWDAF FQGDKENKFS ILVHSRPGFL
101: LNKVTTRSAY FLNRQMNDSI QVDWGEATMI QAERILLQHA LMDPLNERFV FLSDSCIPLY NFSYTYDYIM STPNSFVDSF ADTKEGRYNP KMDPIISVQS
201: WRKGSQWAVL NRKHADIVVK DEILFPMFQL HCKASYFLFW KPTFTVILRL GKKPLPEFWR DQYVPPDTSK IHNCIPDEHY VQTLLAHEGL EGEITRRTVT
301: HTAWLILSSK ERERKGWHPV TYKLADATPM LIQSIKDIDN INYETEHRRE WCTNKEKPAP CFLFARKFTR PAALRLLNMD VEKIPEMEFM LDAVHDHHSE
401: NHDPLWDDDM EELTRKLQA

Best Arabidopsis Sequence Match ( AT5G14550.3 )
(BLAST)

001: MKKKVSQQKL LYRWKRKVYA TLMFAFCFGT FVFIQARFAS IQARFNRISA SLDSLKKPRL DQRPQIAFLF IARNRLPLEF VWDAFFKGED GKFSIYVHSR
101: PGFVLNEATT RSKYFLDRQL NDSIQVDWGE STMIEAERVL LRHALRDSFN HRFVFLSDSC IPLYSFSYTY NYIMSTPTSF VDSFADTKDS RYNPRMNPII
201: PVRNWRKGSQ WVVLNRKHAE IVVNDTSVFP MFQQHCRRKS LPEFWRDRPV PAEGWKEHNC IPDEHYVQTL LSQKGVDSEL TRRSLTHSAW DLSSSKSNER
301: RGWHPMTYKF SDATPDLIQS IKGIDNINYE TEYRREWCSS KGKPSPCFLF ARKFTRPAAL RLLREVNFSF TIIA

Arabidopsis Description

At5g14550 [Source:UniProtKB/TrEMBL;Acc:B6IDH4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.