Subcellular Localization
min:
: max
Winner_takes_all: golgi
Predictor Summary:
Predictor Summary:
- plastid 3
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g009120.2.1 | Tomato | nucleus | 95.06 | 93.85 |
| PGSC0003DMT400037735 | Potato | cytosol | 46.49 | 86.89 |
| PGSC0003DMT400014396 | Potato | cytosol | 46.75 | 60.81 |
| KRH60391 | Soybean | golgi, plastid | 58.44 | 59.84 |
| GSMUA_Achr6P09800_001 | Banana | cytosol | 43.12 | 59.71 |
| KRH41690 | Soybean | golgi | 57.4 | 59.41 |
| TraesCS1D01G394500.1 | Wheat | mitochondrion | 42.86 | 56.51 |
| PGSC0003DMT400035937 | Potato | mitochondrion | 42.34 | 55.44 |
| HORVU1Hr1G085260.1 | Barley | cytosol | 34.29 | 55.0 |
| KRH48513 | Soybean | golgi | 62.86 | 54.14 |
| KRH39163 | Soybean | golgi | 62.34 | 53.22 |
| PGSC0003DMT400013770 | Potato | golgi | 56.62 | 52.91 |
| CDX73016 | Canola | mitochondrion | 46.75 | 51.87 |
| Bra015963.1-P | Field mustard | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole | 46.75 | 51.43 |
| PGSC0003DMT400012489 | Potato | golgi | 45.19 | 46.65 |
| PGSC0003DMT400063986 | Potato | golgi | 46.49 | 45.09 |
| PGSC0003DMT400006434 | Potato | golgi, nucleus, plasma membrane | 44.94 | 44.82 |
| AT1G73810.1 | Thale cress | golgi, nucleus, peroxisome | 48.57 | 44.74 |
| Os02t0327500-01 | Rice | golgi | 45.71 | 40.09 |
| Zm00001d016103_P001 | Maize | golgi, plasma membrane, plastid | 45.45 | 39.24 |
| TraesCS1B01G413900.1 | Wheat | golgi, mitochondrion | 47.01 | 39.01 |
| TraesCS1A01G386500.1 | Wheat | golgi, mitochondrion | 47.01 | 38.76 |
| Zm00001d053393_P002 | Maize | golgi, plastid | 44.68 | 38.31 |
| OQU84731 | Sorghum | plastid | 46.49 | 37.29 |
| PGSC0003DMT400073984 | Potato | golgi | 35.32 | 34.61 |
| HORVU1Hr1G085240.4 | Barley | golgi, mitochondrion, plastid | 41.56 | 34.04 |
| PGSC0003DMT400055283 | Potato | golgi | 30.39 | 31.45 |
| PGSC0003DMT400042390 | Potato | golgi | 30.39 | 31.2 |
| PGSC0003DMT400001379 | Potato | mitochondrion | 28.05 | 25.78 |
| CDX73017 | Canola | cytosol | 0.26 | 7.14 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400037733 | EnsemblPlantsGene:PGSC0003DMG400014555 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0008375 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016740 | InterPro:Glyco_trans_14 | PANTHER:PTHR31042 | PANTHER:PTHR31042:SF7 |
| PFAM:PF02485 | PFscan:PS51257 | PGSC:PGSC0003DMG400014555 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000295D36D |
| UniProt:M1B5T3 | MapMan:35.1 | : | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400014555]
Coordinates
chr5:+:3143409..3146825
Molecular Weight (calculated)
44653.9 Da
IEP (calculated)
9.472
GRAVY (calculated)
-0.247
Length
385 amino acids
Sequence
(BLAST)
(BLAST)
001: MAIKSFNTPI NIINLLSSFF LFACGITCGI IFTFYFKNFS VNLQVINGQI LNYSSLNSHP LSPPPSPRSI IPRLGLNEYI KPINVEHDMS DEELFWRSSM
101: VPKVKEFPFK RVPKVAFMFL TRGPILLSPL WELFFKGNEG FYSIYIHSDP SYNQSHIDES SIFHGRRIPS KEVEWGKINM VEAEKRLLAN ALLDISNQRF
201: VLLSEACIPL FNFSTIYTHL MNSTKNFVET YDQPGPVGRG RYHPQMSPTI KLPQWRKGSQ WFEMDRDLAL EVVSDQTYFS VFKKHCKGSC YADEHFLPTF
301: VSMKFEKRNT GRTLTWVDWS KGGPHPTRYY RSDISVEFLK KLRSESSCEY NGEKTSVCHL FARKFTPHAL SRLLIFAPKV MQFNH
101: VPKVKEFPFK RVPKVAFMFL TRGPILLSPL WELFFKGNEG FYSIYIHSDP SYNQSHIDES SIFHGRRIPS KEVEWGKINM VEAEKRLLAN ALLDISNQRF
201: VLLSEACIPL FNFSTIYTHL MNSTKNFVET YDQPGPVGRG RYHPQMSPTI KLPQWRKGSQ WFEMDRDLAL EVVSDQTYFS VFKKHCKGSC YADEHFLPTF
301: VSMKFEKRNT GRTLTWVDWS KGGPHPTRYY RSDISVEFLK KLRSESSCEY NGEKTSVCHL FARKFTPHAL SRLLIFAPKV MQFNH
001: MKNQKDQNSS SLSSSSPSLT TKLLNAQYHH FLNLLSYSLI LCCGIIIGIL LHSSLQNFSS NSSLSIQRIS QLFIVSSLPP SPPPPPPPSP PSEPEQNGLK
101: SFIEPPEKLM HDMEDEELLW RASMAPKIKN YPFPRTPKVA FMFMTKGHLP LARLWERFFR GHEGLFTIYV HSYPSYNQSD PEDSVFRGRH IPSKRVDWGY
201: VNMVEAEQRL LANALLDISN ERFVLLSESC IPLFNFTTVY SYLINSTQTH VESYDQLGGV GRGRYSPLMQ PHVQLRHWRK GSQWIEVDRA MALEIISDRI
301: YWPLFYSYCH HGCYADEHYI PTLLNIKSSL KRRNSNRTLT WVDWSKGGPH PNRFIRHEVT AEFMENLRSG GECLYNGEET NICYLFARKF LPTALDRLLR
401: LSRTVLHF
101: SFIEPPEKLM HDMEDEELLW RASMAPKIKN YPFPRTPKVA FMFMTKGHLP LARLWERFFR GHEGLFTIYV HSYPSYNQSD PEDSVFRGRH IPSKRVDWGY
201: VNMVEAEQRL LANALLDISN ERFVLLSESC IPLFNFTTVY SYLINSTQTH VESYDQLGGV GRGRYSPLMQ PHVQLRHWRK GSQWIEVDRA MALEIISDRI
301: YWPLFYSYCH HGCYADEHYI PTLLNIKSSL KRRNSNRTLT WVDWSKGGPH PNRFIRHEVT AEFMENLRSG GECLYNGEET NICYLFARKF LPTALDRLLR
401: LSRTVLHF
Arabidopsis Description
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q9M9C4]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.