Factsheet for PGSC0003DMT400013770

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 3
mitochondrion 1
golgi 3
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	golgi
Plant-mPloc:	cytosol, plastid
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g036400.1.1	Tomato	extracellular	96.6	96.6
PGSC0003DMT400014396	Potato	cytosol	54.85	76.35
PGSC0003DMT400037735	Potato	cytosol	30.58	61.16
GSMUA_Achr6P09800_001	Banana	cytosol	40.53	60.07
PGSC0003DMT400035937	Potato	mitochondrion	42.23	59.18
PGSC0003DMT400037733	Potato	golgi	52.91	56.62
TraesCS1D01G394500.1	Wheat	mitochondrion	39.32	55.48
HORVU1Hr1G085260.1	Barley	cytosol	31.07	53.33
Bra015963.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	42.48	50.0
CDX73016	Canola	mitochondrion	41.75	49.57
PGSC0003DMT400012489	Potato	golgi	44.17	48.79
PGSC0003DMT400006434	Potato	golgi, nucleus, plasma membrane	44.9	47.93
AT1G73810.1	Thale cress	golgi, nucleus, peroxisome	44.66	44.02
PGSC0003DMT400063986	Potato	golgi	41.5	43.07
Os02t0327500-01	Rice	golgi	42.96	40.32
Zm00001d016103_P001	Maize	golgi, plasma membrane, plastid	43.45	40.13
Zm00001d053393_P002	Maize	golgi, plastid	42.96	39.42
TraesCS1B01G413900.1	Wheat	golgi, mitochondrion	43.45	38.58
OQU84731	Sorghum	plastid	44.42	38.12
TraesCS1A01G386500.1	Wheat	golgi, mitochondrion	42.72	37.69
PGSC0003DMT400073984	Potato	golgi	35.92	37.66
PGSC0003DMT400055283	Potato	golgi	30.1	33.33
HORVU1Hr1G085240.4	Barley	golgi, mitochondrion, plastid	37.62	32.98
PGSC0003DMT400042390	Potato	golgi	28.88	31.73
PGSC0003DMT400001379	Potato	mitochondrion	27.67	27.21
CDX73017	Canola	cytosol	0.49	14.29

Protein Annotations

EnsemblPlants:PGSC0003DMT400013770	EnsemblPlantsGene:PGSC0003DMG400005391	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0008375
GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	InterPro:Glyco_trans_14	PANTHER:PTHR31042	PANTHER:PTHR31042:SF7
PFAM:PF02485	PGSC:PGSC0003DMG400005391	SEG:seg	TMHMM:TMhelix	UniParc:UPI00029638AB	UniProt:M1A3C0
MapMan:35.1	:	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400005391]

Coordinates

chr12:+:40541067..40542874

Molecular Weight (calculated)

48036.5 Da

IEP (calculated)

9.905

GRAVY (calculated)

-0.312

Length

412 amino acids

Sequence
(BLAST)

001: MKHETHQNQI ISAKLFNSQR YIHSLIVYFL FFGSGLVIGI SLTFYLKDVP ITLKKKLFTI QPSPPLIVPP KSRPPPSPPL NQEQGVTMNN NIKRKIPGVG
101: RIGLTDYIKP PEAMHDMMDD ELIWRASMVP KAKIFPFNRT PKVAFMFLAR GSLPLAPLWE RFFKGHEGRY SIYIHSQPSF KGDAPEEGPI FHARRVPSKR
201: VDWGEFSMVD AERRLLANAL LDMSNERFVL LSEACIPLYN FTTIYTYIMN STKTFVESYD EWGPVGRGRY NSQMTPWVTI EQWRKGSQWF ELDREIALDM
301: ITDTKFFNLF KDFCRPACYS DEHYLPTFVT MRYWWKNGNR TLTWVDWTKG GPHPTKFART EVTRELLHQM RTGIQCMYNG EPTSMCYLFA RKFLPSALDR
401: LLKFAPKVMM FG

Best Arabidopsis Sequence Match ( AT1G68390.1 )
(BLAST)

001: MKNQKDQNSS SLSSSSPSLT TKLLNAQYHH FLNLLSYSLI LCCGIIIGIL LHSSLQNFSS NSSLSIQRIS QLFIVSSLPP SPPPPPPPSP PSEPEQNGLK
101: SFIEPPEKLM HDMEDEELLW RASMAPKIKN YPFPRTPKVA FMFMTKGHLP LARLWERFFR GHEGLFTIYV HSYPSYNQSD PEDSVFRGRH IPSKRVDWGY
201: VNMVEAEQRL LANALLDISN ERFVLLSESC IPLFNFTTVY SYLINSTQTH VESYDQLGGV GRGRYSPLMQ PHVQLRHWRK GSQWIEVDRA MALEIISDRI
301: YWPLFYSYCH HGCYADEHYI PTLLNIKSSL KRRNSNRTLT WVDWSKGGPH PNRFIRHEVT AEFMENLRSG GECLYNGEET NICYLFARKF LPTALDRLLR
401: LSRTVLHF

Arabidopsis Description

Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q9M9C4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.