Factsheet for PGSC0003DMT400035937

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g065860.2.1	Tomato	golgi	96.26	74.28
KRH05512	Soybean	nucleus	77.55	59.84
VIT_04s0008g00690.t01	Wine grape	golgi, nucleus, plasma membrane, plastid	77.55	59.22
KRH15500	Soybean	nucleus	76.53	59.21
PGSC0003DMT400014396	Potato	cytosol	56.46	56.08
EER93518	Sorghum	golgi, plasma membrane, plastid	72.45	55.18
Zm00001d033892_P001	Maize	endoplasmic reticulum, golgi, plasma membrane	68.03	54.79
PGSC0003DMT400012489	Potato	golgi	68.71	54.16
GSMUA_Achr1P14240_001	Banana	golgi	65.65	53.91
GSMUA_Achr3P25730_001	Banana	golgi	65.65	53.76
PGSC0003DMT400006434	Potato	golgi, nucleus, plasma membrane	70.41	53.63
TraesCS4A01G253400.1	Wheat	golgi, plasma membrane, plastid	70.75	53.2
PGSC0003DMT400037735	Potato	cytosol	37.07	52.91
TraesCS4D01G061000.1	Wheat	golgi, plasma membrane, plastid	70.41	52.81
TraesCS4B01G062000.1	Wheat	golgi, plasma membrane, plastid	70.41	52.81
EER93516	Sorghum	golgi	68.03	52.63
HORVU4Hr1G010270.2	Barley	golgi, peroxisome	70.41	51.75
EER93517	Sorghum	golgi, mitochondrion, plasma membrane	68.71	50.25
Os03t0731050-00	Rice	plastid	73.13	50.23
Zm00001d033890_P001	Maize	golgi	71.77	50.12
Zm00001d033891_P001	Maize	cytosol, golgi, plasma membrane	67.35	49.13
PGSC0003DMT400063986	Potato	golgi	58.84	43.58
PGSC0003DMT400037733	Potato	golgi	55.44	42.34
PGSC0003DMT400013770	Potato	golgi	59.18	42.23
PGSC0003DMT400073984	Potato	golgi	46.6	34.86
PGSC0003DMT400055283	Potato	golgi	38.78	30.65
PGSC0003DMT400042390	Potato	golgi	38.44	30.13
PGSC0003DMT400001379	Potato	mitochondrion	36.73	25.78

Protein Annotations

EnsemblPlants:PGSC0003DMT400035937	EnsemblPlantsGene:PGSC0003DMG400013834	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0008375
GO:GO:0016020	GO:GO:0016740	InterPro:Glyco_trans_14	PANTHER:PTHR31042	PANTHER:PTHR31042:SF54	PFAM:PF02485
PGSC:PGSC0003DMG400013834	UniParc:UPI000295278D	UniProt:M1B318	MapMan:35.1	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400013834]

Coordinates

chr8:-:37214000..37219279

Molecular Weight (calculated)

34221.3 Da

IEP (calculated)

9.208

GRAVY (calculated)

-0.215

Length

294 amino acids

Sequence
(BLAST)

001: MSDKELLWRA SMVPRVKKYP FKRVPKIAFM FLTKGPLPLA PIWERFFKGH QGFYSIYIHS LPSFEADFPA SSVFYKRQIP SQVTEWGKMS MCDAERRLLA
101: NALLDISNEW FVLLSESCIP LYNFNVIYKY ISQSKHSFVG AFDDPGPYGR GRYDENMLPE VNISQWRKGS QWFEMSRKLA LFIVEDTKFY PKFAEFCRPA
201: CYVDEHYFPT MLTIQASNLL ANRSITWVDW SRGGAHPATF GKSDITEEFM KRMLAGPNCT YNDRNTSMCY IFARKFAPSA LEPLFLLAPK YLGF

Best Arabidopsis Sequence Match ( AT5G11730.1 )
(BLAST)

001: MQNRIVQLEE GKENGITVRS GHYKGFPSKL LLLLGLFLTF SVTVFIISVS TIKYTGIQSV VTTVTSSFVP CREGEPNSLS KWIQPPAVLM HNMSDEELLW
101: RASFWPRRKE YPFKRVPKVA FMFLTKGPLP LASLWERFLK GHKGLYSVYL HPHPSFTAKF PASSVFHRRQ IPSQVAEWGR MSMCDAEKRL LANALLDVSN
201: EWFVLVSESC IPLYNFTTIY SYLSRSKHSF MGAFDDPGPF GRGRYNGNME PEVPLTKWRK GSQWFEVNRD LAATIVKDTL YYPKFKEFCR PACYVDEHYF
301: PTMLTIEKPT VLANRSLTWV DWSRGGPHPA TFGRSDITEN FFGKIFDGRN CSYNGRNTSM CYLFARKFAP SALEPLLHIA PKILGF

Arabidopsis Description

At5g11730 [Source:UniProtKB/TrEMBL;Acc:Q9LYF7]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.