CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, plastid

Predictor Summary:

nucleus 1
plastid 3
golgi 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d033890_P001	Maize	golgi	96.11	88.12
TraesCS4B01G062000.1	Wheat	golgi, plasma membrane, plastid	88.08	86.73
TraesCS4D01G061000.1	Wheat	golgi, plasma membrane, plastid	87.56	86.22
TraesCS4A01G253400.1	Wheat	golgi, plasma membrane, plastid	87.31	86.19
HORVU4Hr1G010270.2	Barley	golgi, peroxisome	87.56	84.5
EER93516	Sorghum	golgi	80.83	82.11
EER93517	Sorghum	golgi, mitochondrion, plasma membrane	76.68	73.63
PGSC0003DMT400035937	Potato	mitochondrion	55.18	72.45
VIT_09s0002g02660.t01	Wine grape	cytosol	53.11	69.73
Os03t0731050-00	Rice	plastid	76.94	69.39
GSMUA_Achr3P25730_001	Banana	golgi	63.99	68.8
CDX80552	Canola	cytosol	27.2	68.63
GSMUA_Achr1P14240_001	Banana	golgi	62.44	67.32
KRH48972	Soybean	cytosol	35.75	64.79
VIT_04s0008g00690.t01	Wine grape	golgi, nucleus, plasma membrane, plastid	64.25	64.42
KRH13326	Soybean	cytosol	35.49	64.32
CDX78440	Canola	cytosol	53.37	63.78
KRH05512	Soybean	nucleus	61.92	62.73
Solyc08g065860.2.1	Tomato	golgi	61.66	62.47
KRH15500	Soybean	nucleus	61.14	62.11
KRH47176	Soybean	cytosol, golgi, plasma membrane	62.18	62.02
AT5G11730.1	Thale cress	golgi	61.92	61.92
CDX97139	Canola	golgi	61.4	61.4
CDX97141	Canola	golgi	61.4	61.4
Bra008941.1-P	Field mustard	golgi	61.4	61.4
KRH44223	Soybean	cytosol, golgi, plasma membrane	61.4	61.24
CDX69735	Canola	golgi	61.14	61.14
Bra006114.1-P	Field mustard	golgi	55.96	60.34
AT5G25970.2	Thale cress	golgi	60.36	60.21
AT3G21310.1	Thale cress	golgi	59.59	60.05
Bra031273.1-P	Field mustard	golgi	58.81	59.58
CDY51451	Canola	golgi	58.29	59.06
CDX70417	Canola	cytosol	45.85	59.0
CDX88209	Canola	golgi	53.37	58.86
Bra006113.1-P	Field mustard	golgi	58.81	58.81
Bra009874.1-P	Field mustard	golgi	58.29	58.29
CDY56916	Canola	cytosol, golgi, plasma membrane, plastid	57.51	58.27
Solyc03g121280.2.1	Tomato	golgi, nucleus, plasma membrane	58.03	58.18
PGSC0003DMT400012489	Potato	golgi	56.22	58.18
CDX87842	Canola	golgi	58.29	57.84
CDY43927	Canola	golgi	58.29	57.84
Bra030418.1-P	Field mustard	golgi	58.29	57.84
PGSC0003DMT400006434	Potato	golgi, nucleus, plasma membrane	57.51	57.51
Solyc06g062490.2.1	Tomato	golgi	54.92	57.3
CDX97140	Canola	golgi	60.36	56.83
CDX78439	Canola	golgi	58.81	56.61
AT1G51770.1	Thale cress	golgi	58.55	55.66
KXG24124	Sorghum	cytosol, golgi, plasma membrane, plastid	55.96	53.07
CDX70416	Canola	golgi	58.29	51.49
EES03971	Sorghum	golgi	45.34	44.3
EES14395	Sorghum	endoplasmic reticulum, golgi, plastid	46.89	43.93
EES02542	Sorghum	golgi	43.26	41.13
EES11719	Sorghum	golgi, mitochondrion, peroxisome	46.89	40.58
EES02543	Sorghum	golgi	41.19	40.05
KXG20769	Sorghum	golgi	37.82	39.25
KXG24737	Sorghum	golgi	38.6	38.9
KXG31955	Sorghum	golgi	41.97	38.57
EES12818	Sorghum	golgi	38.34	38.24
KXG20537	Sorghum	mitochondrion	36.01	36.77
OQU75988	Sorghum	golgi, mitochondrion, plastid, vacuole	25.13	36.6
EES04616	Sorghum	golgi	36.53	36.53
OQU84731	Sorghum	plastid	44.04	35.42
EES19116	Sorghum	golgi	30.57	30.97
KXG33181	Sorghum	golgi, mitochondrion, plastid	30.31	29.92

Protein Annotations

EnsemblPlants:EER93518	EnsemblPlantsGene:SORBI_3001G103200	EntrezGene:8060529	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0008375	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	InterPro:Glyco_trans_14	PANTHER:PTHR31042
PANTHER:PTHR31042:SF54	PFAM:PF02485	ProteinID:EER93518	ProteinID:EER93518.1	RefSeq:XP_002466520.1	SEG:seg
TMHMM:TMhelix	unigene:Sbi.17869	UniParc:UPI0001A82769	UniProt:C5WLZ0	MapMan:35.1	:

Description

hypothetical protein

Coordinates

chr1:-:7899638..7902625

Molecular Weight (calculated)

44361.2 Da

IEP (calculated)

8.454

GRAVY (calculated)

-0.259

Length

386 amino acids

Sequence
(BLAST)

001: MQARVASMED VKEARQAAGQ GRVLPTGMLK VFLGFLLLGV GLSAVGMYMA RHAVAAVAPS LFRPCLGGSS AEEEPEGLER WTRPPARVEH AMTDEELLWR
101: ASFAPRVRGY PFRRVPKVAF MFLTRGPLPL APLWERFFRG HEGRYSIYVH ALPSYHANFT SESVFYRRQI PSKVAEWGQM TMCDAERRLL ANALLDISNE
201: WFVLVSESCI PIFDFNTTYR YFQNSNRSFL MAFDDHGPYG RGRYNWNMTP EVELDQWRKG SQWFEVHREL AIEIVKDTVY YPKFKEFCRP HCYVDEHYFP
301: TMLTIEAPNS LANRSVTWVD WSRGGAHPAT FGRGDITEEF LRRVQKGRTC LYNNQNSTMC FLFARKFAPS ALEPLLELAP TVLGFG

Best Arabidopsis Sequence Match ( AT5G11730.1 )
(BLAST)

001: MQNRIVQLEE GKENGITVRS GHYKGFPSKL LLLLGLFLTF SVTVFIISVS TIKYTGIQSV VTTVTSSFVP CREGEPNSLS KWIQPPAVLM HNMSDEELLW
101: RASFWPRRKE YPFKRVPKVA FMFLTKGPLP LASLWERFLK GHKGLYSVYL HPHPSFTAKF PASSVFHRRQ IPSQVAEWGR MSMCDAEKRL LANALLDVSN
201: EWFVLVSESC IPLYNFTTIY SYLSRSKHSF MGAFDDPGPF GRGRYNGNME PEVPLTKWRK GSQWFEVNRD LAATIVKDTL YYPKFKEFCR PACYVDEHYF
301: PTMLTIEKPT VLANRSLTWV DWSRGGPHPA TFGRSDITEN FFGKIFDGRN CSYNGRNTSM CYLFARKFAP SALEPLLHIA PKILGF

Arabidopsis Description

At5g11730 [Source:UniProtKB/TrEMBL;Acc:Q9LYF7]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.