CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

nucleus 1
plastid 1
golgi 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	mitochondrion
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d008568_P001	Maize	golgi	75.24	82.08
OQU75988	Sorghum	golgi, mitochondrion, plastid, vacuole	40.95	64.91
EES02542	Sorghum	golgi	60.48	62.56
EES02543	Sorghum	golgi	57.86	61.21
EES03971	Sorghum	golgi	40.71	43.29
EER93518	Sorghum	golgi, plasma membrane, plastid	38.57	41.97
EER93516	Sorghum	golgi	37.62	41.58
EER93517	Sorghum	golgi, mitochondrion, plasma membrane	39.29	41.04
KXG24124	Sorghum	cytosol, golgi, plasma membrane, plastid	39.52	40.79
EES14395	Sorghum	endoplasmic reticulum, golgi, plastid	38.81	39.56
EES11719	Sorghum	golgi, mitochondrion, peroxisome	36.9	34.75
KXG20537	Sorghum	mitochondrion	30.0	33.33
OQU84731	Sorghum	plastid	38.1	33.33
EES04616	Sorghum	golgi	30.0	32.64
EES12818	Sorghum	golgi	30.0	32.56
KXG20769	Sorghum	golgi	28.57	32.26
KXG24737	Sorghum	golgi	29.29	32.11
EES19116	Sorghum	golgi	27.14	29.92
KXG33181	Sorghum	golgi, mitochondrion, plastid	25.95	27.88

Protein Annotations

EnsemblPlants:KXG31955	EnsemblPlantsGene:SORBI_3003G083800	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0008375
GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	InterPro:Glyco_trans_14	PANTHER:PTHR31042	PANTHER:PTHR31042:SF26
PFAM:PF02485	ProteinID:KXG31955	ProteinID:KXG31955.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI00081ABE08
UniProt:A0A1B6Q265	MapMan:35.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:7202214..7203743

Molecular Weight (calculated)

46887.4 Da

IEP (calculated)

8.550

GRAVY (calculated)

-0.179

Length

420 amino acids

Sequence
(BLAST)

001: MNDVNKAMAV SHHSHIGGKK LLNVVPMLIL FSLGFVLGMT CNSKFPNLYL SSKFPNFYLS SAAPSPPPSP PPVPSSSSPP PPVPSSPPPA PLPPQNPDPQ
101: VGLARFLAPS SVVMHNMTDE ELMWWASMTP KVRSTPYHRA PKVAFLFLAK GDLPLRPLWE KFFAGHQGLY SIYVHTDPSY TGSPPEDSVF YGRMIPSQKT
201: IWGDVSLVAA ERRLLANALL DIGNERFVLI SESCIPLYNF TTVYAVVTGT NTSFVDVMVT PSRYNELFLE RNNITMAQWR KGEEWFEMDR DLALEVVADG
301: TYFPTFQERC VGLRNCLMDE HYVPTLLSVL RWPRSANRTL TFTDWKRRDG LYHPHRHGAA EVTPELVEEI RGGARSGGRS RNCSAYHDGA TGVCFLFARK
401: FTPDTLQPLL RLAPKVMGFG

Best Arabidopsis Sequence Match ( AT1G68380.1 )
(BLAST)

001: MPTQKDQNSP LSQVIELLKK LLHHFHNLLL YFFILWIGVI VGIIVYPSLQ GLSSPSSLTI QSVSQLFFVT PPPPILSPSF QDNGLDMFLI PLKNIMHDME
101: DNELLWRASM DPKIRDYPYP RIPKVAFMFL TWGPLPLAPL WERFFRGHEG LFTIYVHTNS SYDEFMPQDS VFYGRRIPSK RVDWGNANMV EAERRLLANA
201: LLDINNERFI LLSESCIPLF NFSTVYSFLI DSTLTHVDSY DLTIGRVRYD RRMYPHIRMH QWRKGSQWFE LDRAMALEVV SDTFYWPIFK AYSRCPDEHY
301: IPTLLNMRPS LGLRNANRTL TWTDWSKRRA HPRLFGEWEV NVEFLEWLRM KSVGDCKKNG ENKMRLCFLF ARKFSSTALD ELLRLASIVM YF

Arabidopsis Description

Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q9M9C3]
SUBAcon: [endoplasmic reticulum,golgi,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.