CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

nucleus 1
cytosol 1
mitochondrion 3
golgi 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d015429_P004	Maize	golgi	93.78	96.02
Os02t0175500-01	Rice	golgi	90.41	89.49
TraesCS6D01G143800.1	Wheat	golgi	83.16	82.31
TraesCS6A01G154200.1	Wheat	golgi	82.64	81.79
HORVU6Hr1G030990.4	Barley	golgi	82.38	81.54
TraesCS6B01G181900.1	Wheat	golgi	82.38	81.54
KXG20537	Sorghum	mitochondrion	79.27	80.95
GSMUA_Achr7P08690_001	Banana	endoplasmic reticulum, golgi	57.25	74.66
GSMUA_Achr11P...	Banana	cytosol	53.63	71.13
GSMUA_Achr4P05750_001	Banana	golgi	70.73	69.82
GSMUA_Achr4P12520_001	Banana	golgi	69.43	68.54
EES12818	Sorghum	golgi	67.36	67.18
KXG20769	Sorghum	golgi	62.18	64.52
KXG24737	Sorghum	golgi	61.66	62.14
EER93518	Sorghum	golgi, plasma membrane, plastid	36.53	36.53
EER93517	Sorghum	golgi, mitochondrion, plasma membrane	36.01	34.58
EER93516	Sorghum	golgi	33.94	34.47
KXG24124	Sorghum	cytosol, golgi, plasma membrane, plastid	36.27	34.4
EES03971	Sorghum	golgi	33.94	33.16
EES02543	Sorghum	golgi	32.9	31.99
EES14395	Sorghum	endoplasmic reticulum, golgi, plastid	33.94	31.8
EES02542	Sorghum	golgi	32.38	30.79
EES19116	Sorghum	golgi	30.31	30.71
EES11719	Sorghum	golgi, mitochondrion, peroxisome	35.23	30.49
KXG31955	Sorghum	golgi	32.64	30.0
OQU75988	Sorghum	golgi, mitochondrion, plastid, vacuole	19.17	27.92
KXG33181	Sorghum	golgi, mitochondrion, plastid	28.24	27.88
OQU84731	Sorghum	plastid	32.64	26.25

Protein Annotations

EnsemblPlants:EES04616	EnsemblPlantsGene:SORBI_3004G060300	EntrezGene:8077198	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0008375	GO:GO:0016020	GO:GO:0016740	InterPro:Glyco_trans_14	PANTHER:PTHR31042	PANTHER:PTHR31042:SF19
PFAM:PF02485	ProteinID:EES04616	ProteinID:EES04616.1	RefSeq:XP_002451640.1	TMHMM:TMhelix	unigene:Sbi.17925
UniParc:UPI0001A8564B	UniProt:C5XW74	MapMan:35.1	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:4820707..4826718

Molecular Weight (calculated)

44562.9 Da

IEP (calculated)

8.841

GRAVY (calculated)

-0.201

Length

386 amino acids

Sequence
(BLAST)

001: MKQVWGRSSK DMTAMPPLRH RGAAKKPMWI IVLLSLVCVA LMGAYVYPPR RYSACYFFAS SVCTPFKDWL PAVARERTDE EIVSSVVIRD LLSMPMAVSK
101: NPKIAFMFLT PGTLPFEKLW EKFLQGHDGR YSIYIHASRE KPVHSSSLFV GREIHSEKVV WGRISMVDAE KRLLANALED VDNQIFVLLS DSCVPLHTFD
201: YIYNYLMGTN VSFIDCFLDP GPHGTGRYSM EMLPEIEQRD FRKGAQWFAI TRRHALLILA DNLYYNKFKL YCKPAEGHNC IADEHYLPTL FNMVDPGGIA
301: NWSVTHVDWS EGKWHPRSYR AADVNYQLLK NITSVNENFH ITSDDKKVMT RTPCMWNGTK RPCYLFARKF YPESLNNLLK LFSSYT

Best Arabidopsis Sequence Match ( AT2G19160.2 )
(BLAST)

001: MKAIKGWRLG KINYMQSLPG ARHRAPTRKP IWIIAVLSLI AMFVIGAYMF PHHSKAACYM FSSKGCKGLT DWLPPSLREY SDDEIAARVV ISEILSSPRV
101: IKKSSKIAFM FLTPGTLPFE KLWDLFFQGH EGKFSVYIHA SKDTPVHTSR YFLNREIRSD EVVWGRISMI DAERRLLTNA LRDPENQQFV LLSDSCVPLR
201: SFEYMYNYMM HSNVSYVDCF DDPGPHGTGR HMDHMLPEIP REDFRKGAQW FSMKRQHAVV TVADNLYYSK FRDYCGPGVE GNKNCIADEH YLPTFFYMLD
301: PTGIANWTVT YVDWSERKWH PRKYMPEDIT LELIKNISSI DAVSRVTSEK NGVVSWTHCM WNGIKRPCYL FGRKFHADTL DKLMELFPNY TSIV

Arabidopsis Description

At2g19160 [Source:UniProtKB/TrEMBL;Acc:Q8W460]
SUBAcon: [mitochondrion,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.