CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 3
mitochondrion 3
golgi 4
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	golgi
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d039969_P001	Maize	plasma membrane	92.86	93.55
Os10t0165000-01	Rice	golgi	72.17	72.52
EES02543	Sorghum	golgi	66.26	67.76
OQU75988	Sorghum	golgi, mitochondrion, plastid, vacuole	39.66	60.75
KXG31955	Sorghum	golgi	62.56	60.48
EES03971	Sorghum	golgi	42.61	43.8
EER93518	Sorghum	golgi, plasma membrane, plastid	41.13	43.26
EER93516	Sorghum	golgi	39.9	42.63
KXG24124	Sorghum	cytosol, golgi, plasma membrane, plastid	41.38	41.28
EER93517	Sorghum	golgi, mitochondrion, plasma membrane	40.64	41.04
EES14395	Sorghum	endoplasmic reticulum, golgi, plastid	39.9	39.32
EES11719	Sorghum	golgi, mitochondrion, peroxisome	39.9	36.32
KXG24737	Sorghum	golgi	32.27	34.2
KXG20537	Sorghum	mitochondrion	31.77	34.13
OQU84731	Sorghum	plastid	40.15	33.96
EES12818	Sorghum	golgi	31.53	33.07
KXG20769	Sorghum	golgi	29.8	32.53
EES04616	Sorghum	golgi	30.79	32.38
KXG33181	Sorghum	golgi, mitochondrion, plastid	28.82	29.92
EES19116	Sorghum	golgi	27.59	29.4

Protein Annotations

EnsemblPlants:EES02542	EnsemblPlantsGene:SORBI_3003G083600	EntrezGene:8061356	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0008375	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	InterPro:Glyco_trans_14	PANTHER:PTHR31042
PANTHER:PTHR31042:SF26	PFAM:PF02485	ProteinID:EES02542	ProteinID:EES02542.1	RefSeq:XP_002457422.1	SEG:seg
TMHMM:TMhelix	UniParc:UPI0001A84BC6	UniProt:C5XQT7	MapMan:35.1	:	:

Description

hypothetical protein

Coordinates

chr3:-:7192003..7193753

Molecular Weight (calculated)

45584.5 Da

IEP (calculated)

9.837

GRAVY (calculated)

-0.320

Length

406 amino acids

Sequence
(BLAST)

001: MKDTKKPTRA AASRLGGRLV GVASMLLLVS LGFVLGVTSS NAMFIRYYLP FMPPSLRSSA APSSSSSSPP PLTTPPTPPS QPPPPPPQSP QVRSAGFLSP
101: NGVMHNMTDE ELYWRASMAP MVRRTPDSRV PKVAFLFLVR GDLPLRPLWE KFFAGHEGRY SIYVHAHPSY TGSPPPDSAF YGRYIPSQIT KWGDASLVEA
201: ERRLLANALL DVGNERFALF SEACIPVYDF ATVYAFLTGS DTSFVDCYEN GGSRSRYRPF FATRNITLAR WRKGAQWFEM DRALALESVA DDACFPAFRD
301: FCVGRRECLI DEHYLPTLVS LLRWGRRNAN RTLTYADWKR AVNRHPHTHG ADEVTEERIR EIREEGGRRC FYNGARNGIC NLFARKFSPD TLQQLLRLAP
401: KVMGFG

Best Arabidopsis Sequence Match ( AT1G10280.1 )
(BLAST)

001: MARGGKEEGE KHIGLLKLAQ TLSFLLIFMA GIIIGLAASS HIDRYFNSLP RMFSSTTNLQ SIPFSTPDYS NCTIIHRDCT GNDDNESDDG GVKAEKPKVR
101: DCWSIDGFVR PENLSHGMTD DELFWRASMV PVKEEYPYDR VPKVAFMFLT RGPLPMLPLW EKFFKGNEKY LSVYVHTPPG YDMNVSRDSP FYDRQIPSQR
201: VEWGSPLLTD AEKRLLANAL LDFSNERFVL LSESCVPVYN FSTVYTYLIN SAYSFVDSYD EPTRYGRGRY SRKMLPDIKL HHWRKGSQWF EVNRKIAIYI
301: ISDSKYYSLF KQFCRPACYP DEHYIPTFLN MFHGSMNANR SVTWVDWSIG GPHPATYAAA NITEGFLQSI RKNETDCLYN EEPTSLCFLF ARKFSPSALA
401: PLMNLSSTVL GF

Arabidopsis Description

At1g10280 [Source:UniProtKB/TrEMBL;Acc:Q9SY70]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.