CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, endoplasmic reticulum, plastid

Predictor Summary:

nucleus 1
golgi 1
plastid 2
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d035039_P001	Maize	plasma membrane	96.12	95.65
TraesCS7D01G317600.1	Wheat	cytosol, golgi, peroxisome	84.71	86.17
TraesCS7A01G320800.1	Wheat	cytosol, golgi, peroxisome	84.22	85.68
TraesCS7B01G221700.1	Wheat	cytosol, golgi, peroxisome	83.74	85.19
HORVU7Hr1G076790.5	Barley	golgi	81.8	82.4
Os08t0110400-01	Rice	cytosol, golgi, peroxisome	80.58	81.57
GSMUA_Achr8P32350_001	Banana	golgi, mitochondrion	59.95	62.06
VIT_12s0035g01710.t01	Wine grape	golgi	53.4	58.05
CDY31036	Canola	golgi	52.91	57.82
CDX93443	Canola	golgi	53.88	57.81
EES11719	Sorghum	golgi, mitochondrion, peroxisome	62.38	57.62
KRH26270	Soybean	golgi	53.16	57.18
CDX94911	Canola	golgi	53.4	57.14
PGSC0003DMT400063986	Potato	golgi	54.61	56.68
CDY20644	Canola	golgi	53.64	56.67
KRH06031	Soybean	golgi, plasma membrane, plastid	53.4	55.84
Solyc01g103150.2.1	Tomato	golgi	53.64	55.67
Bra018450.1-P	Field mustard	golgi	53.88	54.95
Bra019951.1-P	Field mustard	endoplasmic reticulum, golgi, plastid	55.1	54.83
EES03971	Sorghum	golgi	52.43	54.68
AT1G10280.1	Thale cress	golgi	54.61	54.61
EER93518	Sorghum	golgi, plasma membrane, plastid	43.93	46.89
EER93516	Sorghum	golgi	42.96	46.58
EER93517	Sorghum	golgi, mitochondrion, plasma membrane	45.15	46.27
EES02543	Sorghum	golgi	40.05	41.56
KXG24124	Sorghum	cytosol, golgi, plasma membrane, plastid	39.56	40.05
EES02542	Sorghum	golgi	39.32	39.9
KXG31955	Sorghum	golgi	39.56	38.81
OQU75988	Sorghum	golgi, mitochondrion, plastid, vacuole	24.27	37.74
KXG20769	Sorghum	golgi	33.5	37.1
KXG24737	Sorghum	golgi	32.77	35.25
KXG20537	Sorghum	mitochondrion	31.55	34.39
EES04616	Sorghum	golgi	31.8	33.94
EES12818	Sorghum	golgi	31.8	33.85
OQU84731	Sorghum	plastid	38.84	33.33
EES19116	Sorghum	golgi	28.88	31.23
KXG33181	Sorghum	golgi, mitochondrion, plastid	28.88	30.43

Protein Annotations

MapMan:35.1	EntrezGene:8068543	UniProt:C5YLW8	EnsemblPlants:EES14395	ProteinID:EES14395	ProteinID:EES14395.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0008375	GO:GO:0016020	GO:GO:0016021
GO:GO:0016740	InterPro:Glyco_trans_14	PFAM:PF02485	PANTHER:PTHR31042	PANTHER:PTHR31042:SF3	EnsemblPlantsGene:SORBI_3007G011200
unigene:Sbi.9196	TMHMM:TMhelix	UniParc:UPI0001A8790D	RefSeq:XP_002444900.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr7:-:1000555..1005074

Molecular Weight (calculated)

46848.5 Da

IEP (calculated)

8.062

GRAVY (calculated)

-0.282

Length

412 amino acids

Sequence
(BLAST)

001: MWGGDSNAKQ MLKSRGGTGG GLPTSGDDES DYFPPTPRKD SWWSTGLLKL VTATVIFMGG VVLGLSVSGS VARYYYNASH AELFFPTTTY SCDPRDRDCG
101: MGLAFRAFVH PPRLAHSMTD DELFWRASLV PKAEEFPFQR VPKVAFLFMA RGPLPFAPLW DKFFRDHQGL YSVYVHTVPD YKLNVSKNSA FYGRQIPSQD
201: VSWGSITLVD AEKRLLANAL LDFSNERFVL LSESCIPVFN FPTVYEYLIN SAHSFVESYN IDTPQSAGRY NRRMAPHIMA DQWRKGSEWF ELNRELAVQI
301: VADYKYYSIF RKHCRPSCYP DEHYIPTYLH LFHGPLNANR TITWVDWSRG GPHPASYGAA DITEDFIQAI RNNGTQCFYN SKPTSVCYLF ARKFAPNALG
401: RLMNMTSTVL DF

Best Arabidopsis Sequence Match ( AT1G10280.1 )
(BLAST)

001: MARGGKEEGE KHIGLLKLAQ TLSFLLIFMA GIIIGLAASS HIDRYFNSLP RMFSSTTNLQ SIPFSTPDYS NCTIIHRDCT GNDDNESDDG GVKAEKPKVR
101: DCWSIDGFVR PENLSHGMTD DELFWRASMV PVKEEYPYDR VPKVAFMFLT RGPLPMLPLW EKFFKGNEKY LSVYVHTPPG YDMNVSRDSP FYDRQIPSQR
201: VEWGSPLLTD AEKRLLANAL LDFSNERFVL LSESCVPVYN FSTVYTYLIN SAYSFVDSYD EPTRYGRGRY SRKMLPDIKL HHWRKGSQWF EVNRKIAIYI
301: ISDSKYYSLF KQFCRPACYP DEHYIPTFLN MFHGSMNANR SVTWVDWSIG GPHPATYAAA NITEGFLQSI RKNETDCLYN EEPTSLCFLF ARKFSPSALA
401: PLMNLSSTVL GF

Arabidopsis Description

At1g10280 [Source:UniProtKB/TrEMBL;Acc:Q9SY70]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.