CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

nucleus 1
plastid 1
golgi 4
cytosol 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	golgi
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d039970_P001	Maize	plastid	82.87	89.16
EES02542	Sorghum	golgi	67.76	66.26
KXG31955	Sorghum	golgi	61.21	57.86
OQU75988	Sorghum	golgi, mitochondrion, plastid, vacuole	38.54	57.74
EES03971	Sorghum	golgi	42.57	42.78
KXG24124	Sorghum	cytosol, golgi, plasma membrane, plastid	42.32	41.28
EER93518	Sorghum	golgi, plasma membrane, plastid	40.05	41.19
EER93516	Sorghum	golgi	39.04	40.79
EER93517	Sorghum	golgi, mitochondrion, plasma membrane	40.81	40.3
EES14395	Sorghum	endoplasmic reticulum, golgi, plastid	41.56	40.05
EES11719	Sorghum	golgi, mitochondrion, peroxisome	41.31	36.77
OQU84731	Sorghum	plastid	42.07	34.79
KXG20769	Sorghum	golgi	31.49	33.6
KXG24737	Sorghum	golgi	31.99	33.16
KXG20537	Sorghum	mitochondrion	31.49	33.07
EES04616	Sorghum	golgi	31.99	32.9
EES12818	Sorghum	golgi	30.73	31.52
EES19116	Sorghum	golgi	27.96	29.13
KXG33181	Sorghum	golgi, mitochondrion, plastid	27.96	28.39

Protein Annotations

EnsemblPlants:EES02543	EnsemblPlantsGene:SORBI_3003G083700	EntrezGene:8061357	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0008375	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	InterPro:Glyco_trans_14	PANTHER:PTHR31042
PANTHER:PTHR31042:SF26	PFAM:PF02485	ProteinID:EES02543	ProteinID:EES02543.1	RefSeq:XP_002457423.1	SEG:seg
TMHMM:TMhelix	UniParc:UPI0001A84BC7	UniProt:C5XQT8	MapMan:35.1	:	:

Description

hypothetical protein

Coordinates

chr3:-:7196482..7198057

Molecular Weight (calculated)

45167.6 Da

IEP (calculated)

9.337

GRAVY (calculated)

-0.255

Length

397 amino acids

Sequence
(BLAST)

001: MKKDTNKPTR APRSVGKLLY VVHMLLFVSL GFVLGMASIA KFPNIYSYTP FVASLPFPTP PPPPPPAATP PLLPAPPKNN LRMGLMDLLA PSGVIHNMTD
101: KELFWRASMA PKAHRTPYRR VPKIAFLFLV RGELPLRPLW EKFFAGHHEL YSIYVHTDPS YTGSPPPDSV FYGRMIPSKE TKWGHVNLVE AESRLLASAL
201: LDHSNERFVL LSEACIPVYN FTTVYGFLTG SGTSFVDSYG NGDCRARYDR FFAERTNITI EHWRKGAQWF EMDRSLAIEV VADEHYIQMF RDFCVGRWRC
301: LTDEHYLPTL LNLLGWTRNA NRSLTYADWK RPQGMHPHTH DGAEVTEELI QKIREDGGNR CFYNGARDGI CSLFARKFSP DTLQPLLRLA PKVMGFG

Best Arabidopsis Sequence Match ( AT1G68380.1 )
(BLAST)

001: MPTQKDQNSP LSQVIELLKK LLHHFHNLLL YFFILWIGVI VGIIVYPSLQ GLSSPSSLTI QSVSQLFFVT PPPPILSPSF QDNGLDMFLI PLKNIMHDME
101: DNELLWRASM DPKIRDYPYP RIPKVAFMFL TWGPLPLAPL WERFFRGHEG LFTIYVHTNS SYDEFMPQDS VFYGRRIPSK RVDWGNANMV EAERRLLANA
201: LLDINNERFI LLSESCIPLF NFSTVYSFLI DSTLTHVDSY DLTIGRVRYD RRMYPHIRMH QWRKGSQWFE LDRAMALEVV SDTFYWPIFK AYSRCPDEHY
301: IPTLLNMRPS LGLRNANRTL TWTDWSKRRA HPRLFGEWEV NVEFLEWLRM KSVGDCKKNG ENKMRLCFLF ARKFSSTALD ELLRLASIVM YF

Arabidopsis Description

Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q9M9C3]
SUBAcon: [endoplasmic reticulum,golgi,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.