Factsheet for TraesCS4A01G253400.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, plastid

Predictor Summary:

golgi 1
mitochondrion 1
plastid 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane, plastid
Any Predictor:	golgi, plasma membrane, plastid
MultiLoc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G061000.1	Wheat	golgi, plasma membrane, plastid	98.21	97.96
TraesCS4B01G062000.1	Wheat	golgi, plasma membrane, plastid	97.7	97.45
HORVU4Hr1G010270.2	Barley	golgi, peroxisome	95.14	93.0
EER93518	Sorghum	golgi, plasma membrane, plastid	86.19	87.31
Zm00001d033892_P001	Maize	endoplasmic reticulum, golgi, plasma membrane	75.45	80.82
EER93516	Sorghum	golgi	77.24	79.47
Zm00001d033890_P001	Maize	golgi	84.65	78.62
Zm00001d033891_P001	Maize	cytosol, golgi, plasma membrane	76.47	74.19
EER93517	Sorghum	golgi, mitochondrion, plasma membrane	75.96	73.88
PGSC0003DMT400035937	Potato	mitochondrion	53.2	70.75
Os03t0731050-00	Rice	plastid	74.94	68.46
GSMUA_Achr3P25730_001	Banana	golgi	62.66	68.25
VIT_09s0002g02660.t01	Wine grape	cytosol	50.9	67.69
GSMUA_Achr1P14240_001	Banana	golgi	60.87	66.48
CDX80552	Canola	cytosol	25.58	65.36
KRH48972	Soybean	cytosol	34.78	63.85
KRH13326	Soybean	cytosol	34.53	63.38
VIT_04s0008g00690.t01	Wine grape	golgi, nucleus, plasma membrane, plastid	62.4	63.38
CDX78440	Canola	cytosol	51.15	61.92
KRH05512	Soybean	nucleus	59.59	61.15
KRH15500	Soybean	nucleus	59.34	61.05
KRH47176	Soybean	cytosol, golgi, plasma membrane	60.36	60.98
Solyc08g065860.2.1	Tomato	golgi	58.82	60.37
KRH44223	Soybean	cytosol, golgi, plasma membrane	59.59	60.21
CDX97139	Canola	golgi	59.34	60.1
CDX97141	Canola	golgi	59.34	60.1
Bra008941.1-P	Field mustard	golgi	59.34	60.1
CDX69735	Canola	golgi	59.08	59.84
AT5G11730.1	Thale cress	golgi	58.82	59.59
Bra006114.1-P	Field mustard	golgi	53.96	58.94
CDX70417	Canola	cytosol	44.76	58.33
Bra006113.1-P	Field mustard	golgi	57.54	58.29
AT3G21310.1	Thale cress	golgi	57.03	58.22
AT5G25970.2	Thale cress	golgi	57.54	58.14
PGSC0003DMT400012489	Potato	golgi	54.99	57.64
Bra031273.1-P	Field mustard	golgi	55.75	57.22
CDX88209	Canola	golgi	51.15	57.14
Bra009874.1-P	Field mustard	golgi	56.27	56.99
CDY51451	Canola	golgi	55.5	56.96
Solyc03g121280.2.1	Tomato	golgi, nucleus, plasma membrane	56.01	56.88
Solyc06g062490.2.1	Tomato	golgi	53.71	56.76
CDX78439	Canola	golgi	57.54	56.11
PGSC0003DMT400006434	Potato	golgi, nucleus, plasma membrane	55.24	55.96
CDY56916	Canola	cytosol, golgi, plasma membrane, plastid	54.48	55.91
CDX97140	Canola	golgi	58.06	55.37
CDX87842	Canola	golgi	54.73	55.01
CDY43927	Canola	golgi	54.73	55.01
Bra030418.1-P	Field mustard	golgi	54.73	55.01
AT1G51770.1	Thale cress	golgi	54.73	52.71
CDX70416	Canola	golgi	56.78	50.8
TraesCS5A01G010800.1	Wheat	endoplasmic reticulum, golgi, peroxisome, plastid	51.41	47.86
TraesCS3A01G386500.1	Wheat	golgi	45.78	45.78
TraesCS3A01G037000.1	Wheat	cytosol	36.06	45.48
TraesCS3A01G036900.1	Wheat	cytosol	34.53	45.45
TraesCS7A01G320800.1	Wheat	cytosol, golgi, peroxisome	46.04	44.44
TraesCS1A01G022400.1	Wheat	golgi, vacuole	35.04	38.92
TraesCS7A01G419900.1	Wheat	golgi	36.57	38.65
TraesCS6A01G154200.1	Wheat	golgi	37.85	37.95
TraesCS2A01G430900.2	Wheat	mitochondrion	37.08	37.56
TraesCS7A01G489600.1	Wheat	golgi	35.81	37.04
TraesCS1A01G386500.1	Wheat	golgi, mitochondrion	42.2	35.33
TraesCS1A01G114000.1	Wheat	golgi	30.95	31.03
TraesCS3A01G258700.1	Wheat	golgi, mitochondrion, plastid	29.92	29.77

Protein Annotations

EnsemblPlants:TraesCS4A01G253400.1	EnsemblPlantsGene:TraesCS4A01G253400	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0008375
GO:GO:0016020	GO:GO:0016740	InterPro:Glyco_trans_14	PANTHER:PTHR31042	PANTHER:PTHR31042:SF54	PFAM:PF02485
SEG:seg	TMHMM:TMhelix	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr4A:-:565435085..565437902

Molecular Weight (calculated)

44572.5 Da

IEP (calculated)

8.613

GRAVY (calculated)

-0.231

Length

391 amino acids

Sequence
(BLAST)

001: MQARVASMED MKEARLGAPG QGGGRVFPTG MLKVFLGFLL LGVGLSAAGM YMARHTLAAA APAIFRPCLG ASASAEPQPL DGLERWTRPP SRARHAMTDE
101: ELLWRASFAP LVRPYPFPRV PKVAFMFLTR GPLPLAPLWE RFFRGHEGRY SVYVHALPSY RANFTKDSVF YHRQIPSKVA EWGQMTMCDA ERRLLANALL
201: DISNEWFVLV SESCIPIFDF NTTYDYFQNS SQSFVMVFDD PGPYGRGRYN YNMTPEVEIE QWRKGSQWFE VDRDLAIEII RDTRYYPKFK EFCRPHCYVD
301: EHYFPTMLTI EAPQSLANRS VTWVDWSRGG AHPATFGRGD ITEEFLRRVQ TGRTCLYNNQ NSTTCFLFAR KFAPSALQPL LVLAPTVLGY G

Best Arabidopsis Sequence Match ( AT5G11730.1 )
(BLAST)

001: MQNRIVQLEE GKENGITVRS GHYKGFPSKL LLLLGLFLTF SVTVFIISVS TIKYTGIQSV VTTVTSSFVP CREGEPNSLS KWIQPPAVLM HNMSDEELLW
101: RASFWPRRKE YPFKRVPKVA FMFLTKGPLP LASLWERFLK GHKGLYSVYL HPHPSFTAKF PASSVFHRRQ IPSQVAEWGR MSMCDAEKRL LANALLDVSN
201: EWFVLVSESC IPLYNFTTIY SYLSRSKHSF MGAFDDPGPF GRGRYNGNME PEVPLTKWRK GSQWFEVNRD LAATIVKDTL YYPKFKEFCR PACYVDEHYF
301: PTMLTIEKPT VLANRSLTWV DWSRGGPHPA TFGRSDITEN FFGKIFDGRN CSYNGRNTSM CYLFARKFAP SALEPLLHIA PKILGF

Arabidopsis Description

At5g11730 [Source:UniProtKB/TrEMBL;Acc:Q9LYF7]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.