Subcellular Localization
min:
: max
Winner_takes_all: golgi
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 1
- golgi 5
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400012489 | Potato | golgi | 94.32 | 93.57 |
| VIT_09s0002g02660.t01 | Wine grape | cytosol | 55.14 | 69.39 |
| Solyc03g121280.2.1 | Tomato | golgi, nucleus, plasma membrane | 71.89 | 69.09 |
| KRH47176 | Soybean | cytosol, golgi, plasma membrane | 63.51 | 60.72 |
| Solyc08g065860.2.1 | Tomato | golgi | 62.43 | 60.63 |
| KRH44223 | Soybean | cytosol, golgi, plasma membrane | 62.97 | 60.21 |
| KRH48972 | Soybean | cytosol | 34.59 | 60.09 |
| KRH13326 | Soybean | cytosol | 34.05 | 59.15 |
| AT3G21310.1 | Thale cress | golgi | 60.0 | 57.96 |
| GSMUA_Achr1P14240_001 | Banana | golgi | 54.59 | 56.42 |
| GSMUA_Achr3P25730_001 | Banana | golgi | 54.59 | 56.27 |
| EER93518 | Sorghum | golgi, plasma membrane, plastid | 57.3 | 54.92 |
| CDY51451 | Canola | golgi | 56.49 | 54.86 |
| Bra031273.1-P | Field mustard | golgi | 56.22 | 54.59 |
| Bra030418.1-P | Field mustard | golgi | 56.76 | 53.98 |
| CDX87842 | Canola | golgi | 56.76 | 53.98 |
| CDY43927 | Canola | golgi | 56.76 | 53.98 |
| Zm00001d033892_P001 | Maize | endoplasmic reticulum, golgi, plasma membrane | 53.24 | 53.97 |
| TraesCS4A01G253400.1 | Wheat | golgi, plasma membrane, plastid | 56.76 | 53.71 |
| CDY56916 | Canola | cytosol, golgi, plasma membrane, plastid | 54.86 | 53.28 |
| TraesCS4D01G061000.1 | Wheat | golgi, plasma membrane, plastid | 56.22 | 53.06 |
| TraesCS4B01G062000.1 | Wheat | golgi, plasma membrane, plastid | 55.95 | 52.81 |
| EER93516 | Sorghum | golgi | 54.05 | 52.63 |
| HORVU4Hr1G010270.2 | Barley | golgi, peroxisome | 55.95 | 51.75 |
| AT1G51770.1 | Thale cress | golgi | 56.76 | 51.72 |
| Zm00001d033890_P001 | Maize | golgi | 56.76 | 49.88 |
| EER93517 | Sorghum | golgi, mitochondrion, plasma membrane | 53.51 | 49.25 |
| Zm00001d033891_P001 | Maize | cytosol, golgi, plasma membrane | 53.51 | 49.13 |
| Solyc05g009130.2.1 | Tomato | golgi | 49.46 | 48.8 |
| Os03t0731050-00 | Rice | plastid | 54.32 | 46.96 |
| Solyc01g103150.2.1 | Tomato | golgi | 48.38 | 45.09 |
| Solyc12g036400.1.1 | Tomato | extracellular | 48.65 | 43.69 |
| Solyc05g009120.2.1 | Tomato | nucleus | 45.95 | 43.59 |
| Solyc02g036250.1.1 | Tomato | cytosol | 17.03 | 40.13 |
| Solyc03g119260.2.1 | Tomato | golgi, nucleus, plasma membrane | 45.95 | 39.91 |
| Solyc05g009110.1.1 | Tomato | golgi | 40.0 | 38.44 |
| Solyc07g008940.2.1 | Tomato | golgi | 35.41 | 33.33 |
| Solyc02g086550.2.1 | Tomato | golgi, mitochondrion | 33.24 | 32.89 |
| Solyc02g080970.2.1 | Tomato | plastid | 33.24 | 31.46 |
Protein Annotations
| EnsemblPlants:Solyc06g062490.2.1 | EnsemblPlantsGene:Solyc06g062490.2 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0008375 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016740 | InterPro:Glyco_trans_14 | PANTHER:PTHR31042 | PANTHER:PTHR31042:SF54 |
| PFAM:PF02485 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000276676A | UniProt:K4C6Y0 | MapMan:35.1 |
Description
No Description!
Coordinates
chr6:-:39423812..39425298
Molecular Weight (calculated)
42922.0 Da
IEP (calculated)
9.634
GRAVY (calculated)
-0.153
Length
370 amino acids
Sequence
(BLAST)
(BLAST)
001: MGILENGKDN KPLSLKVLQF LLLFLGLGIA LSILSMFMLR FSELKKVLPV VQSPCFEQQN SLENWIKPLS NLHHSMNDAE LFWRASFVPQ MKKLPFKRTP
101: KIAFLFLTRG PLPLAPLWER FFKGNEEFYS IYIHNLPSYN PDFPTSSVFY GRQVPSQVAE WGKISITDAE RRLLANALLD ISNEWFIILS ESCIPLHNFS
201: VIYRYISESK YSFVNVFDDP SSVGRGRYNW KMSPVVKITQ WRKGSQWFEV NRKLAVDIVT DDIYYPKFKQ FCKPACYVDE HYFPTMLHIQ SPHLLTNTSL
301: TWVDWHRGGA HPATFGKADV TDKFMKQLSE GQRRCVYSNQ TTSYCLLFAR KFSPSALDPL LKLSSKYLGF
101: KIAFLFLTRG PLPLAPLWER FFKGNEEFYS IYIHNLPSYN PDFPTSSVFY GRQVPSQVAE WGKISITDAE RRLLANALLD ISNEWFIILS ESCIPLHNFS
201: VIYRYISESK YSFVNVFDDP SSVGRGRYNW KMSPVVKITQ WRKGSQWFEV NRKLAVDIVT DDIYYPKFKQ FCKPACYVDE HYFPTMLHIQ SPHLLTNTSL
301: TWVDWHRGGA HPATFGKADV TDKFMKQLSE GQRRCVYSNQ TTSYCLLFAR KFSPSALDPL LKLSSKYLGF
001: MGMEEGIKDN AASAPNSRPT NQLKALLPMR VLQVFLLFFV LVLGISVISM HMIKYLKIQT LAPSTLISTY DERITLESLI KPPLNGWHSM NDSELLWRAS
101: MEPRILDYPF KRVPKMAFMF LTKGPLPFAP LWERFFKGHE GFYSIYVHTL PNYRSDFPSS SVFYRRQIPS QHVAWGEMSM CDAERRLLAN ALLDISNEWF
201: VLLSEACIPL RGFNFVYRYV SRSRYSFMGS VDEDGPYGRG RYSYAMGPEV SLNEWRKGSQ WFEINRALAV DIVEDMVYYN KFKEFCRPPC YVDEHYFPTM
301: LSIGYPDFLA NRTLTWTDWS RGGAHPATFG KADITEKFIK KLSRGKACFY NDQPSQVCYL FARKFAPSAL KPLLKLAPKV LGF
101: MEPRILDYPF KRVPKMAFMF LTKGPLPFAP LWERFFKGHE GFYSIYVHTL PNYRSDFPSS SVFYRRQIPS QHVAWGEMSM CDAERRLLAN ALLDISNEWF
201: VLLSEACIPL RGFNFVYRYV SRSRYSFMGS VDEDGPYGRG RYSYAMGPEV SLNEWRKGSQ WFEINRALAV DIVEDMVYYN KFKEFCRPPC YVDEHYFPTM
301: LSIGYPDFLA NRTLTWTDWS RGGAHPATFG KADITEKFIK KLSRGKACFY NDQPSQVCYL FARKFAPSAL KPLLKLAPKV LGF
Arabidopsis Description
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Source:TAIR;Acc:AT3G21310]
SUBAcon: [golgi]
SUBAcon: [golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.