Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 4
- extracellular 3
- golgi 5
- plasma membrane 3
- endoplasmic reticulum 3
- vacuole 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400037733 | Potato | golgi | 93.85 | 95.06 |
| Solyc05g009110.1.1 | Tomato | golgi | 74.36 | 75.32 |
| KRH60391 | Soybean | golgi, plastid | 58.46 | 60.64 |
| GSMUA_Achr6P09800_001 | Banana | cytosol | 42.82 | 60.07 |
| KRH41690 | Soybean | golgi | 57.18 | 59.95 |
| TraesCS1D01G394500.1 | Wheat | mitochondrion | 41.79 | 55.82 |
| KRH48513 | Soybean | golgi | 63.33 | 55.26 |
| HORVU1Hr1G085260.1 | Barley | cytosol | 33.59 | 54.58 |
| KRH39163 | Soybean | golgi | 63.08 | 54.55 |
| Solyc12g036400.1.1 | Tomato | extracellular | 55.13 | 52.18 |
| CDX73016 | Canola | mitochondrion | 45.64 | 51.3 |
| Bra015963.1-P | Field mustard | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole | 45.64 | 50.86 |
| Solyc03g119260.2.1 | Tomato | golgi, nucleus, plasma membrane | 52.05 | 47.65 |
| Solyc05g009130.2.1 | Tomato | golgi | 44.62 | 46.4 |
| Solyc08g065860.2.1 | Tomato | golgi | 45.13 | 46.19 |
| Solyc06g062490.2.1 | Tomato | golgi | 43.59 | 45.95 |
| Solyc03g121280.2.1 | Tomato | golgi, nucleus, plasma membrane | 44.36 | 44.94 |
| AT1G73810.1 | Thale cress | golgi, nucleus, peroxisome | 47.18 | 44.02 |
| Solyc01g103150.2.1 | Tomato | golgi | 42.82 | 42.07 |
| Os02t0327500-01 | Rice | golgi | 45.64 | 40.55 |
| Zm00001d016103_P001 | Maize | golgi, plasma membrane, plastid | 44.87 | 39.24 |
| TraesCS1B01G413900.1 | Wheat | golgi, mitochondrion | 46.67 | 39.22 |
| Solyc02g036250.1.1 | Tomato | cytosol | 15.64 | 38.85 |
| TraesCS1A01G386500.1 | Wheat | golgi, mitochondrion | 46.41 | 38.76 |
| Zm00001d053393_P002 | Maize | golgi, plastid | 43.85 | 38.08 |
| OQU84731 | Sorghum | plastid | 46.41 | 37.71 |
| HORVU1Hr1G085240.4 | Barley | golgi, mitochondrion, plastid | 41.54 | 34.47 |
| Solyc07g008940.2.1 | Tomato | golgi | 34.62 | 34.35 |
| Solyc02g080970.2.1 | Tomato | plastid | 31.03 | 30.95 |
| Solyc02g086550.2.1 | Tomato | golgi, mitochondrion | 27.44 | 28.61 |
| CDX73017 | Canola | cytosol | 0.26 | 7.14 |
Protein Annotations
| EnsemblPlants:Solyc05g009120.2.1 | EnsemblPlantsGene:Solyc05g009120.2 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0008375 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016740 | InterPro:Glyco_trans_14 | PANTHER:PTHR31042 | PANTHER:PTHR31042:SF7 |
| PFAM:PF02485 | PFscan:PS51257 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0002766890 | UniProt:K4BX86 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr5:-:3244625..3248053
Molecular Weight (calculated)
45001.2 Da
IEP (calculated)
9.623
GRAVY (calculated)
-0.201
Length
390 amino acids
Sequence
(BLAST)
(BLAST)
001: MAIKSFNTPI NIINLFSSFF LFACGITCGI IFTFYFKNFS VNLQVINGQI LNFSSFNSQS LSPPPPPASS SSRSIIPRLG LNEYIKPINV EHDMSDEELL
101: WRSSMVPKVK DFPFKIQPKV AFMFLTRGPI LLSPLWELFF KGNEGFYSIY IHSNPSYNQS QVDESSIFHG RRIPSKEVEW GKINMVEAEK RLLANALVDI
201: SNQRFVLLSE ACIPLFNFST IYTHLMNSTK NFVETYDLPG PVGRGRYHPR MSPTIKLAQW RKGSQWFEMD RDLALEVVSD QTYFSVFKKH CKGSCYADEH
301: FLPTFVSMKF EKRNTGRTLT WVDWSKGGPH PTRFYRSDIS VEFLKKLRSE SSCEYNGEKT SICHLFARKF TPHALSRLLI FAPKVMQFNH
101: WRSSMVPKVK DFPFKIQPKV AFMFLTRGPI LLSPLWELFF KGNEGFYSIY IHSNPSYNQS QVDESSIFHG RRIPSKEVEW GKINMVEAEK RLLANALVDI
201: SNQRFVLLSE ACIPLFNFST IYTHLMNSTK NFVETYDLPG PVGRGRYHPR MSPTIKLAQW RKGSQWFEMD RDLALEVVSD QTYFSVFKKH CKGSCYADEH
301: FLPTFVSMKF EKRNTGRTLT WVDWSKGGPH PTRFYRSDIS VEFLKKLRSE SSCEYNGEKT SICHLFARKF TPHALSRLLI FAPKVMQFNH
001: MKNQKDQNSS SLSSSSPSLT TKLLNAQYHH FLNLLSYSLI LCCGIIIGIL LHSSLQNFSS NSSLSIQRIS QLFIVSSLPP SPPPPPPPSP PSEPEQNGLK
101: SFIEPPEKLM HDMEDEELLW RASMAPKIKN YPFPRTPKVA FMFMTKGHLP LARLWERFFR GHEGLFTIYV HSYPSYNQSD PEDSVFRGRH IPSKRVDWGY
201: VNMVEAEQRL LANALLDISN ERFVLLSESC IPLFNFTTVY SYLINSTQTH VESYDQLGGV GRGRYSPLMQ PHVQLRHWRK GSQWIEVDRA MALEIISDRI
301: YWPLFYSYCH HGCYADEHYI PTLLNIKSSL KRRNSNRTLT WVDWSKGGPH PNRFIRHEVT AEFMENLRSG GECLYNGEET NICYLFARKF LPTALDRLLR
401: LSRTVLHF
101: SFIEPPEKLM HDMEDEELLW RASMAPKIKN YPFPRTPKVA FMFMTKGHLP LARLWERFFR GHEGLFTIYV HSYPSYNQSD PEDSVFRGRH IPSKRVDWGY
201: VNMVEAEQRL LANALLDISN ERFVLLSESC IPLFNFTTVY SYLINSTQTH VESYDQLGGV GRGRYSPLMQ PHVQLRHWRK GSQWIEVDRA MALEIISDRI
301: YWPLFYSYCH HGCYADEHYI PTLLNIKSSL KRRNSNRTLT WVDWSKGGPH PNRFIRHEVT AEFMENLRSG GECLYNGEET NICYLFARKF LPTALDRLLR
401: LSRTVLHF
Arabidopsis Description
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q9M9C4]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.