Factsheet for TraesCS1D01G394500.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
peroxisome 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G085260.1	Barley	cytosol	71.58	87.08
TraesCS1A01G386500.1	Wheat	golgi, mitochondrion	97.26	60.81
PGSC0003DMT400037735	Potato	cytosol	42.12	59.71
TraesCS1B01G413900.1	Wheat	golgi, mitochondrion	94.86	59.7
VIT_17s0000g03400.t01	Wine grape	cytosol	59.59	58.78
VIT_17s0000g03410.t01	Wine grape	cytosol	57.19	56.61
GSMUA_Achr6P09800_001	Banana	cytosol	53.08	55.76
PGSC0003DMT400014396	Potato	cytosol	55.14	54.39
Os02t0327500-01	Rice	golgi	80.82	53.76
Zm00001d016103_P001	Maize	golgi, plasma membrane, plastid	75.34	49.33
Zm00001d053393_P002	Maize	golgi, plastid	75.68	49.22
HORVU1Hr1G085240.4	Barley	golgi, mitochondrion, plastid	77.74	48.3
OQU84731	Sorghum	plastid	77.74	47.29
CDX73016	Canola	mitochondrion	53.42	44.96
KRH41690	Soybean	golgi	57.19	44.89
KRH60391	Soybean	golgi, plastid	57.53	44.68
Bra015963.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	53.08	44.29
PGSC0003DMT400037733	Potato	golgi	56.51	42.86
VIT_01s0011g03850.t01	Wine grape	golgi, plastid	58.9	42.47
Solyc05g009120.2.1	Tomato	nucleus	55.82	41.79
PGSC0003DMT400013770	Potato	golgi	55.48	39.32
Solyc12g036400.1.1	Tomato	extracellular	55.48	39.32
TraesCS4D01G061000.1	Wheat	golgi, plasma membrane, plastid	52.4	39.03
Solyc05g009110.1.1	Tomato	golgi	51.03	38.7
KRH35920	Soybean	golgi, plasma membrane	54.11	38.07
Solyc03g119260.2.1	Tomato	golgi, nucleus, plasma membrane	55.48	38.03
AT1G73810.1	Thale cress	golgi, nucleus, peroxisome	54.11	37.8
TraesCS7D01G317600.1	Wheat	cytosol, golgi, peroxisome	52.4	37.78
KRG90861	Soybean	golgi, plasma membrane	54.45	37.77
KRH38159	Soybean	golgi	56.51	37.76
TraesCS1D01G022300.1	Wheat	golgi, plasma membrane, vacuole	49.32	36.83
TraesCS2D01G566600.1	Wheat	cytosol, golgi, plasma membrane	52.4	36.78
KRH39163	Soybean	golgi	56.51	36.59
KRH48513	Soybean	golgi	55.82	36.47
TraesCS3D01G379500.1	Wheat	golgi	48.29	36.15
TraesCS5D01G015600.1	Wheat	cytosol, golgi, mitochondrion	51.37	34.09
TraesCS3D01G042700.1	Wheat	golgi	44.52	32.66
TraesCS3D01G043200.1	Wheat	golgi, mitochondrion, plasma membrane, plastid	44.86	32.59
TraesCS3D01G042800.2	Wheat	golgi, plasma membrane, plastid	45.21	31.73
TraesCS7D01G476000.1	Wheat	golgi	40.75	31.48
TraesCS2D01G428700.2	Wheat	mitochondrion	40.75	31.32
TraesCS7D01G412700.1	Wheat	golgi	39.38	31.08
TraesCS3D01G043100.1	Wheat	plastid	44.52	30.88
TraesCS6D01G143800.1	Wheat	golgi	40.07	30.0
TraesCS3D01G258800.1	Wheat	golgi, mitochondrion, plastid	36.3	26.9
TraesCS1D01G115700.1	Wheat	golgi	35.27	26.48
CDX73017	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:TraesCS1D01G394500.1	EnsemblPlantsGene:TraesCS1D01G394500	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0008375
GO:GO:0016020	GO:GO:0016740	InterPro:Glyco_trans_14	PANTHER:PTHR31042	PANTHER:PTHR31042:SF7	PFAM:PF02485
SEG:seg	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr1D:-:463471796..463477571

Molecular Weight (calculated)

33269.0 Da

IEP (calculated)

10.042

GRAVY (calculated)

-0.207

Length

292 amino acids

Sequence
(BLAST)

001: MALAAAAPRA VRVGAGAAPK VAFLFLAKWD LPMAPLWERF FEGHRGLYSV YVHTDPAFNA SAAAPDSGSA FHRRHIPSKE VKWGHISMVE AERRLLAHAL
101: LDHSNARFIL LSESHVPLFD FPTVYSYLTN STKVYMESYD EPGGTGRGRY KRGMAPTITP WQWRKGSQWF EMDRALAIDV VADNVYFPVF KKFCKRNCYA
201: DEHYLPTFLH IRHPEVAAGR TVTWVDWSHG GPHPSRFTRM EVTVDFLRWL RGGTTCEYNG KTTTVCFLFA RKFLPNSLTR FLRFAPKVMG FG

Best Arabidopsis Sequence Match ( AT1G73810.1 )
(BLAST)

001: MKKSQETQED SLQQESRHQL HQIVISKILR SHRFFQNLVL YSFLIGFGFG LGFILNVHIR NVSFNPQLFR LSSLSPSSFS TPPLQPQPEI VVPLNDTVVA
101: TNDDDHEVGQ KGHYLMMPEN VVHNMTEEEL LLRASKIQEK TLKMTKKAAF MFLTRGKLPL AKLWERFFKG HEGLFSIYIH TSDPFYFDDH TPETSPFYRR
201: RIPSKEVGWG MVSMVAAERR LLANALLDAG NHRFVLLSES DIPLFNFSTI YSYLINSQHS YVDVYDLPGP AGRGRYNRRM SPVISRTNWR KGSQWFEIDR
301: EVALAVVSDT TYFPVFEKYC LWNCYADEHY LSTFVHAMFP GKNANRSLTW TDWSRRGPHP RKYTRRSVTG EFLRRVRNRE QGCVYNGKKS EKCYLFARKF
401: DGSTLDKLLY FAHSVMGF

Arabidopsis Description

Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q9C9T1]
SUBAcon: [peroxisome,golgi,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.