Factsheet for Solyc12g036400.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 2
mitochondrion 1
golgi 4
cytosol 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	golgi
Plant-mPloc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

extracellular: 29876421

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400013770	Potato	golgi	96.6	96.6
Solyc03g119260.2.1	Tomato	golgi, nucleus, plasma membrane	69.66	67.37
GSMUA_Achr6P09800_001	Banana	cytosol	40.29	59.71
TraesCS1D01G394500.1	Wheat	mitochondrion	39.32	55.48
Solyc05g009120.2.1	Tomato	nucleus	52.18	55.13
HORVU1Hr1G085260.1	Barley	cytosol	31.07	53.33
Solyc05g009110.1.1	Tomato	golgi	47.82	51.17
Bra015963.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	42.96	50.57
CDX73016	Canola	mitochondrion	42.23	50.14
Solyc06g062490.2.1	Tomato	golgi	43.69	48.65
Solyc03g121280.2.1	Tomato	golgi, nucleus, plasma membrane	44.66	47.79
Solyc08g065860.2.1	Tomato	golgi	42.72	46.19
Solyc05g009130.2.1	Tomato	golgi	41.75	45.87
AT1G73810.1	Thale cress	golgi, nucleus, peroxisome	44.42	43.78
Solyc01g103150.2.1	Tomato	golgi	41.75	43.32
Solyc02g036250.1.1	Tomato	cytosol	15.53	40.76
Zm00001d016103_P001	Maize	golgi, plasma membrane, plastid	43.69	40.36
Os02t0327500-01	Rice	golgi	42.96	40.32
Zm00001d053393_P002	Maize	golgi, plastid	43.2	39.64
TraesCS1B01G413900.1	Wheat	golgi, mitochondrion	43.45	38.58
OQU84731	Sorghum	plastid	44.42	38.12
TraesCS1A01G386500.1	Wheat	golgi, mitochondrion	42.72	37.69
Solyc07g008940.2.1	Tomato	golgi	35.92	37.66
HORVU1Hr1G085240.4	Barley	golgi, mitochondrion, plastid	37.62	32.98
Solyc02g086550.2.1	Tomato	golgi, mitochondrion	28.16	31.02
Solyc02g080970.2.1	Tomato	plastid	29.37	30.95
CDX73017	Canola	cytosol	0.49	14.29

Protein Annotations

EnsemblPlants:Solyc12g036400.1.1	EnsemblPlantsGene:Solyc12g036400.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0008375
GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	InterPro:Glyco_trans_14	PANTHER:PTHR31042	PANTHER:PTHR31042:SF7
PFAM:PF02485	SEG:seg	TMHMM:TMhelix	UniParc:UPI000276A19E	UniProt:K4DE97	MapMan:35.1

Description

No Description!

Coordinates

chr12:+:52364264..52366053

Molecular Weight (calculated)

48256.7 Da

IEP (calculated)

9.744

GRAVY (calculated)

-0.317

Length

412 amino acids

Sequence
(BLAST)

001: MKHETHQNQI ISAKLFNSQR YIHSLIVYFL FFGSGLVIGI SLTFYLKDVP ITLKKKLFTI QPSPPLIVPP KSRPPPSLPI FHQEQDVTMN NNIKRKIPGV
101: GRIGLTDYIK PPEAMHDMLD DELIWRASMI PKAKIFPFNR TPKVAFMFLA RGSLPLAPLW ERFFRGHEGH YSIYIHSQPS FKGDAPEEGP IFHGRRVPSK
201: RVDWGEFSMV DAERRLLANA LLDMSNERFV LLSEACIPLY NFTTIYTYIM NSTKTFVESY DEWGPVGRGR YNSQMTPWVT IEQWRKGSQW FELDREIALD
301: MITDQKYFNL FKDFCRPACY SDEHYLPTFV TMRYWWKNGN RTLTWVDWTK GGPHPTKFAR TEVTKELLHQ MRTGIQCMYN GEPTNMCYLF ARKFLPSALD
401: RLLKFAPKVM MF

Best Arabidopsis Sequence Match ( AT1G68390.1 )
(BLAST)

001: MKNQKDQNSS SLSSSSPSLT TKLLNAQYHH FLNLLSYSLI LCCGIIIGIL LHSSLQNFSS NSSLSIQRIS QLFIVSSLPP SPPPPPPPSP PSEPEQNGLK
101: SFIEPPEKLM HDMEDEELLW RASMAPKIKN YPFPRTPKVA FMFMTKGHLP LARLWERFFR GHEGLFTIYV HSYPSYNQSD PEDSVFRGRH IPSKRVDWGY
201: VNMVEAEQRL LANALLDISN ERFVLLSESC IPLFNFTTVY SYLINSTQTH VESYDQLGGV GRGRYSPLMQ PHVQLRHWRK GSQWIEVDRA MALEIISDRI
301: YWPLFYSYCH HGCYADEHYI PTLLNIKSSL KRRNSNRTLT WVDWSKGGPH PNRFIRHEVT AEFMENLRSG GECLYNGEET NICYLFARKF LPTALDRLLR
401: LSRTVLHF

Arabidopsis Description

Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q9M9C4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.