Factsheet for Solyc03g119260.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, nucleus

Predictor Summary:

plastid 2
mitochondrion 1
golgi 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, nucleus, plasma membrane
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	golgi
Plant-mPloc:	golgi, plastid
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400014396	Potato	cytosol	65.96	94.93
Solyc12g036400.1.1	Tomato	extracellular	67.37	69.66
GSMUA_Achr6P09800_001	Banana	cytosol	38.26	58.63
TraesCS1D01G394500.1	Wheat	mitochondrion	38.03	55.48
HORVU1Hr1G085260.1	Barley	cytosol	30.28	53.75
Solyc05g009120.2.1	Tomato	nucleus	47.65	52.05
Solyc05g009110.1.1	Tomato	golgi	45.54	50.39
CDX73016	Canola	mitochondrion	40.14	49.28
Bra015963.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	40.38	49.14
Solyc05g009130.2.1	Tomato	golgi	41.78	47.47
Solyc03g121280.2.1	Tomato	golgi, nucleus, plasma membrane	41.55	45.97
Solyc06g062490.2.1	Tomato	golgi	39.91	45.95
Solyc08g065860.2.1	Tomato	golgi	40.38	45.14
Solyc01g103150.2.1	Tomato	golgi	40.85	43.83
AT1G73810.1	Thale cress	golgi, nucleus, peroxisome	41.78	42.58
Os02t0327500-01	Rice	golgi	42.02	40.77
TraesCS1B01G413900.1	Wheat	golgi, mitochondrion	42.02	38.58
Zm00001d016103_P001	Maize	golgi, plasma membrane, plastid	40.38	38.56
TraesCS1A01G386500.1	Wheat	golgi, mitochondrion	42.25	38.54
Zm00001d053393_P002	Maize	golgi, plastid	40.38	38.31
Solyc02g036250.1.1	Tomato	cytosol	14.08	38.22
Solyc07g008940.2.1	Tomato	golgi	34.04	36.9
OQU84731	Sorghum	plastid	41.31	36.67
HORVU1Hr1G085240.4	Barley	golgi, mitochondrion, plastid	35.21	31.91
Solyc02g086550.2.1	Tomato	golgi, mitochondrion	26.76	30.48
Solyc02g080970.2.1	Tomato	plastid	26.53	28.9
CDX73017	Canola	cytosol	0.7	21.43

Protein Annotations

EnsemblPlants:Solyc03g119260.2.1	EnsemblPlantsGene:Solyc03g119260.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0008375
GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	InterPro:Glyco_trans_14	PANTHER:PTHR31042	PANTHER:PTHR31042:SF7
PFAM:PF02485	SEG:seg	TMHMM:TMhelix	UniParc:UPI00027663E0	UniProt:K4BM75	MapMan:35.1

Description

No Description!

Coordinates

chr3:-:67900423..67903395

Molecular Weight (calculated)

49645.2 Da

IEP (calculated)

9.558

GRAVY (calculated)

-0.327

Length

426 amino acids

Sequence
(BLAST)

001: MKNEQQYQFT TTKLFTISQR YLHNLVSYFF LFGSGLAIGI TLIFYLQDLI PNTLQNKLFF PQIIQFTSPP PPPPPPPHPT PITPPSLPQP QQENIIPLVL
101: NNNETKILDL SGIRLKDFME TPKFSTPKHV MKDEDLIWRA MMVPSVSDLP FNRKPKIAFM FLARGSLPLA PLWERFFQGH EGLYSIYIHS QPSFNGSAPQ
201: EGPIFHDRRV ASKKVEWGKF NMVEAERRLL ANALLDISNE RFVLLSESCI PLYDFTTIYD YIINSANTFM ESYDLISPVG RGRYNKKMKP LVTLAQWRKG
301: SQWFEVDREI AIDIISDQKY SNLFKRFCRP ACYSDEHYLP TFVTMKYWWK NENRTLTWVD WAKGGPHPTK FIRPDVTEDL LYGMRNGTKC EYNGQPSNMC
401: YLFARKFLPS TLDRLLRFAP KIMKFG

Best Arabidopsis Sequence Match ( AT1G68390.1 )
(BLAST)

001: MKNQKDQNSS SLSSSSPSLT TKLLNAQYHH FLNLLSYSLI LCCGIIIGIL LHSSLQNFSS NSSLSIQRIS QLFIVSSLPP SPPPPPPPSP PSEPEQNGLK
101: SFIEPPEKLM HDMEDEELLW RASMAPKIKN YPFPRTPKVA FMFMTKGHLP LARLWERFFR GHEGLFTIYV HSYPSYNQSD PEDSVFRGRH IPSKRVDWGY
201: VNMVEAEQRL LANALLDISN ERFVLLSESC IPLFNFTTVY SYLINSTQTH VESYDQLGGV GRGRYSPLMQ PHVQLRHWRK GSQWIEVDRA MALEIISDRI
301: YWPLFYSYCH HGCYADEHYI PTLLNIKSSL KRRNSNRTLT WVDWSKGGPH PNRFIRHEVT AEFMENLRSG GECLYNGEET NICYLFARKF LPTALDRLLR
401: LSRTVLHF

Arabidopsis Description

Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q9M9C4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.