Factsheet for TraesCS1B01G413900.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, golgi

Predictor Summary:

plastid 1
mitochondrion 3
golgi 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, mitochondrion
Any Predictor:	golgi, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	golgi
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G394500.1	Wheat	mitochondrion	59.7	94.86
HORVU1Hr1G085260.1	Barley	cytosol	45.26	87.5
TraesCS1A01G386500.1	Wheat	golgi, mitochondrion	87.72	87.15
HORVU1Hr1G085240.4	Barley	golgi, mitochondrion, plastid	77.37	76.38
Os02t0327500-01	Rice	golgi	60.78	64.24
Zm00001d016103_P001	Maize	golgi, plasma membrane, plastid	58.62	60.99
Zm00001d053393_P002	Maize	golgi, plastid	58.19	60.13
OQU84731	Sorghum	plastid	60.99	58.96
PGSC0003DMT400037735	Potato	cytosol	26.08	58.74
VIT_17s0000g03400.t01	Wine grape	cytosol	37.28	58.45
GSMUA_Achr6P09800_001	Banana	cytosol	34.05	56.83
VIT_17s0000g03410.t01	Wine grape	cytosol	35.78	56.27
PGSC0003DMT400014396	Potato	cytosol	35.34	55.41
KRH60391	Soybean	golgi, plastid	39.22	48.4
KRH41690	Soybean	golgi	37.72	47.04
PGSC0003DMT400037733	Potato	golgi	39.01	47.01
CDX73016	Canola	mitochondrion	35.13	46.97
Bra015963.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	35.34	46.86
Solyc05g009120.2.1	Tomato	nucleus	39.22	46.67
VIT_01s0011g03850.t01	Wine grape	golgi, plastid	40.52	46.42
PGSC0003DMT400013770	Potato	golgi	38.58	43.45
Solyc12g036400.1.1	Tomato	extracellular	38.58	43.45
Solyc05g009110.1.1	Tomato	golgi	35.99	43.38
TraesCS3B01G478200.1	Wheat	mitochondrion	32.76	43.06
KRH35920	Soybean	golgi, plasma membrane	38.36	42.89
KRG90861	Soybean	golgi, plasma membrane	38.58	42.52
Solyc03g119260.2.1	Tomato	golgi, nucleus, plasma membrane	38.58	42.02
KRH38159	Soybean	golgi	39.44	41.88
AT1G73810.1	Thale cress	golgi, nucleus, peroxisome	37.5	41.63
TraesCS4B01G062000.1	Wheat	golgi, plasma membrane, plastid	34.91	41.33
KRH48513	Soybean	golgi	39.66	41.16
KRH39163	Soybean	golgi	39.66	40.8
TraesCS7B01G221700.1	Wheat	cytosol, golgi, peroxisome	34.91	40.0
TraesCS5B01G008600.1	Wheat	endoplasmic reticulum, golgi, peroxisome	35.56	39.76
TraesCS3B01G418600.1	Wheat	golgi	32.97	39.74
TraesCS2B01G616400.1	Wheat	golgi	35.78	39.71
TraesCS1B01G026200.1	Wheat	golgi	33.19	39.09
TraesCS3B01G047000.1	Wheat	plastid	31.68	36.3
TraesCS3B01G046900.1	Wheat	golgi	30.6	35.95
TraesCS7B01G392700.1	Wheat	golgi	26.94	33.07
TraesCS7B01G320800.1	Wheat	golgi	26.29	32.97
TraesCS2B01G452200.4	Wheat	mitochondrion	26.51	32.37
TraesCS6B01G181900.1	Wheat	golgi	26.94	32.05
TraesCS1B01G134300.1	Wheat	golgi	23.71	28.21
TraesCS3B01G291600.1	Wheat	plastid	24.14	27.05
CDX73017	Canola	cytosol	0.43	14.29

Protein Annotations

EnsemblPlants:TraesCS1B01G413900.1	EnsemblPlantsGene:TraesCS1B01G413900	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0008375
GO:GO:0016020	GO:GO:0016740	InterPro:Glyco_trans_14	PANTHER:PTHR31042	PANTHER:PTHR31042:SF7	PFAM:PF02485
SEG:seg	TMHMM:TMhelix	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr1B:+:638940659..638944624

Molecular Weight (calculated)

50990.4 Da

IEP (calculated)

10.322

GRAVY (calculated)

-0.145

Length

464 amino acids

Sequence
(BLAST)

001: MSAKDNHKQQ QQRAVARMVA AAMSTPCSIK PLLVAIPLAL GFALGIVATL SLMGSTASSA LPGAALELFF PSPPVNVSTE VRRRQPPRPA QVHPQAAPAV
101: SPPVAHAGIR RHAGPPPVQR RQAAPATGVS SPPSPPVVDA GSANKRAAMP VNVTTTNEGG ERAVVDDDDR LMALAAAAPR TVRAAAGCAP KVAFLFLAKW
201: DLPMAPLWER FFEGHRGLYS VYVHTGPAFN ASAAAAPDSS SAFHRRHIPS KEVKWGHISM VEAERRLLAH ALLDHSNARF ILLSESHVPL FDFPTVYSYL
301: INSTKVYMES YDELGGTGRG RYKRGMAPTI IPWQWRKGSQ WFEMDRALAV DVVADDVYFP VFKKFCKRNC YADEHYLPTF LHIRHPEAAA GRTVTWVDWS
401: HGGPHPSRFT RMEVTMDFLQ WLRGGTTCEY NGRTTTVCFL FARKFLPNSL TRFLRFAPKV MGFG

Best Arabidopsis Sequence Match ( AT1G10880.1 )
(BLAST)

001: MKKQKITTFV KELNLRMNSK KEPISLRYIH ILGTVVFFSS VSSLVILLAF YLNQRLQTSL FLVEDYHTLS SNPLTSPSLS PPPSPSPRSS GSNIADEELM
101: WRAAMAPRSP MKNETHPKVA FMFLTRWNLP LSPLWEMFFK GHEGFYSIYV HTSPEFTQEP PESSVFYKKR IPSKAVEWGK CSMMDAEKRL ISHALLEPSN
201: ARFVLLSETC IPLFNFTTIY TYLTRSTRSF LGSFDDPRPM GRGRYTPKML PHVSLSDWRK GNQWFEISRR VAAEIVSDRR YYAVFKDHCR PPCYIDEHYL
301: PTLVNKICPE MNSNRTVTWV DWSRGGSHPA RFVRKDIRVG FLDRIRFGSN CSYEGEVTNV CFLFGRKFHV STLEPLMKIA PYLFGI

Arabidopsis Description

Core-2/I-branching beta-1,6-n-acetylglucosaminyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q0WR07]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.