Subcellular Localization
min:
: max
Winner_takes_all: golgi, nucleus, peroxisome
Predictor Summary:
Predictor Summary:
- nucleus 2
- golgi 1
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX73017 | Canola | cytosol | 3.11 | 92.86 |
| Bra015963.1-P | Field mustard | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole | 63.64 | 76.0 |
| CDX73016 | Canola | mitochondrion | 62.92 | 75.79 |
| PGSC0003DMT400037735 | Potato | cytosol | 29.43 | 59.71 |
| VIT_17s0000g03400.t01 | Wine grape | cytosol | 41.87 | 59.12 |
| VIT_17s0000g03410.t01 | Wine grape | cytosol | 40.67 | 57.63 |
| GSMUA_Achr6P09800_001 | Banana | cytosol | 37.08 | 55.76 |
| PGSC0003DMT400014396 | Potato | cytosol | 39.0 | 55.07 |
| TraesCS1D01G394500.1 | Wheat | mitochondrion | 37.8 | 54.11 |
| KRH60391 | Soybean | golgi, plastid | 46.89 | 52.13 |
| HORVU1Hr1G085260.1 | Barley | cytosol | 29.9 | 52.08 |
| KRH41690 | Soybean | golgi | 44.5 | 50.0 |
| PGSC0003DMT400037733 | Potato | golgi | 44.74 | 48.57 |
| VIT_01s0011g03850.t01 | Wine grape | golgi, plastid | 46.65 | 48.15 |
| KRH35920 | Soybean | golgi, plasma membrane | 46.89 | 47.23 |
| Solyc05g009120.2.1 | Tomato | nucleus | 44.02 | 47.18 |
| KRG90861 | Soybean | golgi, plasma membrane | 47.37 | 47.03 |
| AT1G68380.1 | Thale cress | endoplasmic reticulum, golgi, plasma membrane | 43.3 | 46.17 |
| Solyc05g009110.1.1 | Tomato | golgi | 42.34 | 45.97 |
| AT1G68390.1 | Thale cress | plastid | 44.26 | 45.34 |
| KRH38159 | Soybean | golgi | 47.13 | 45.08 |
| AT5G11730.1 | Thale cress | golgi | 41.63 | 45.08 |
| PGSC0003DMT400013770 | Potato | golgi | 44.02 | 44.66 |
| Solyc12g036400.1.1 | Tomato | extracellular | 43.78 | 44.42 |
| KRH39163 | Soybean | golgi | 46.17 | 42.79 |
| KRH48513 | Soybean | golgi | 45.69 | 42.73 |
| AT5G25970.2 | Thale cress | golgi | 39.47 | 42.64 |
| AT5G16170.1 | Thale cress | golgi | 41.87 | 42.58 |
| AT3G21310.1 | Thale cress | golgi | 39.0 | 42.56 |
| Solyc03g119260.2.1 | Tomato | golgi, nucleus, plasma membrane | 42.58 | 41.78 |
| AT1G10880.1 | Thale cress | golgi | 38.52 | 41.71 |
| AT1G51770.1 | Thale cress | golgi | 40.43 | 41.63 |
| Os02t0327500-01 | Rice | golgi | 43.3 | 41.23 |
| AT1G10280.1 | Thale cress | golgi | 39.0 | 39.56 |
| Zm00001d053393_P002 | Maize | golgi, plastid | 42.11 | 39.2 |
| Zm00001d016103_P001 | Maize | golgi, plasma membrane, plastid | 40.91 | 38.34 |
| TraesCS1B01G413900.1 | Wheat | golgi, mitochondrion | 41.63 | 37.5 |
| OQU84731 | Sorghum | plastid | 42.58 | 37.08 |
| TraesCS1A01G386500.1 | Wheat | golgi, mitochondrion | 41.15 | 36.83 |
| AT4G30060.1 | Thale cress | golgi | 34.45 | 35.91 |
| AT2G19160.1 | Thale cress | golgi, mitochondrion | 33.49 | 35.53 |
| AT4G31350.4 | Thale cress | golgi | 31.82 | 35.37 |
| AT5G57270.5 | Thale cress | golgi | 32.78 | 35.31 |
| AT4G25870.1 | Thale cress | cytosol, golgi, mitochondrion, plastid | 32.06 | 34.45 |
| HORVU1Hr1G085240.4 | Barley | golgi, mitochondrion, plastid | 35.65 | 31.7 |
| AT5G14550.1 | Thale cress | mitochondrion | 28.47 | 31.57 |
| AT1G62305.1 | Thale cress | golgi | 27.51 | 30.42 |
| AT1G11940.1 | Thale cress | golgi | 27.27 | 29.77 |
Protein Annotations
| MapMan:35.1 | EntrezGene:843717 | ProteinID:AAG52068.1 | ProteinID:AEE35511.1 | ArrayExpress:AT1G73810 | EnsemblPlantsGene:AT1G73810 |
| RefSeq:AT1G73810 | TAIR:AT1G73810 | RefSeq:AT1G73810-TAIR-G | EnsemblPlants:AT1G73810.1 | TAIR:AT1G73810.1 | Unigene:At.28571 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0008375 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016740 | GO:GO:0016757 | InterPro:Glyco_trans_14 | EMBL:KJ138938 | RefSeq:NP_177522.1 | PFAM:PF02485 |
| PO:PO:0000293 | PANTHER:PTHR31042 | PANTHER:PTHR31042:SF7 | UniProt:Q9C9T1 | TMHMM:TMhelix | UniParc:UPI00000A8C90 |
| SEG:seg | : | : | : | : | : |
Description
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q9C9T1]
Coordinates
chr1:-:27752342..27755297
Molecular Weight (calculated)
48691.3 Da
IEP (calculated)
9.813
GRAVY (calculated)
-0.409
Length
418 amino acids
Sequence
(BLAST)
(BLAST)
001: MKKSQETQED SLQQESRHQL HQIVISKILR SHRFFQNLVL YSFLIGFGFG LGFILNVHIR NVSFNPQLFR LSSLSPSSFS TPPLQPQPEI VVPLNDTVVA
101: TNDDDHEVGQ KGHYLMMPEN VVHNMTEEEL LLRASKIQEK TLKMTKKAAF MFLTRGKLPL AKLWERFFKG HEGLFSIYIH TSDPFYFDDH TPETSPFYRR
201: RIPSKEVGWG MVSMVAAERR LLANALLDAG NHRFVLLSES DIPLFNFSTI YSYLINSQHS YVDVYDLPGP AGRGRYNRRM SPVISRTNWR KGSQWFEIDR
301: EVALAVVSDT TYFPVFEKYC LWNCYADEHY LSTFVHAMFP GKNANRSLTW TDWSRRGPHP RKYTRRSVTG EFLRRVRNRE QGCVYNGKKS EKCYLFARKF
401: DGSTLDKLLY FAHSVMGF
101: TNDDDHEVGQ KGHYLMMPEN VVHNMTEEEL LLRASKIQEK TLKMTKKAAF MFLTRGKLPL AKLWERFFKG HEGLFSIYIH TSDPFYFDDH TPETSPFYRR
201: RIPSKEVGWG MVSMVAAERR LLANALLDAG NHRFVLLSES DIPLFNFSTI YSYLINSQHS YVDVYDLPGP AGRGRYNRRM SPVISRTNWR KGSQWFEIDR
301: EVALAVVSDT TYFPVFEKYC LWNCYADEHY LSTFVHAMFP GKNANRSLTW TDWSRRGPHP RKYTRRSVTG EFLRRVRNRE QGCVYNGKKS EKCYLFARKF
401: DGSTLDKLLY FAHSVMGF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.