Subcellular Localization
min:
: max
Winner_takes_all: golgi
Predictor Summary:
Predictor Summary:
- plastid 4
- golgi 3
- mitochondrion 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY31228 | Canola | golgi | 83.03 | 85.95 |
| CDY21023 | Canola | golgi | 83.55 | 85.11 |
| Bra016802.1-P | Field mustard | golgi | 83.55 | 85.11 |
| CDY34605 | Canola | golgi | 77.02 | 78.04 |
| AT1G62305.1 | Thale cress | golgi | 72.85 | 73.81 |
| Bra031797.1-P | Field mustard | cytosol | 60.31 | 68.34 |
| VIT_10s0116g00980.t01 | Wine grape | golgi | 61.62 | 62.11 |
| Solyc02g036250.1.1 | Tomato | cytosol | 25.07 | 61.15 |
| PGSC0003DMT400042390 | Potato | golgi | 56.14 | 57.33 |
| KRH11480 | Soybean | mitochondrion | 56.4 | 57.29 |
| Solyc02g080970.2.1 | Tomato | plastid | 57.18 | 56.01 |
| PGSC0003DMT400055283 | Potato | golgi | 54.05 | 55.65 |
| CDY66259 | Canola | cytosol | 60.31 | 53.72 |
| GSMUA_Achr3P28930_001 | Banana | golgi | 51.44 | 51.44 |
| KRH36494 | Soybean | mitochondrion | 55.87 | 50.83 |
| HORVU3Hr1G065000.4 | Barley | cytosol | 42.3 | 50.15 |
| GSMUA_Achr9P21910_001 | Banana | golgi | 50.13 | 49.74 |
| Os01t0695200-01 | Rice | plastid | 46.21 | 48.76 |
| TraesCS3A01G258700.1 | Wheat | golgi, mitochondrion, plastid | 48.83 | 47.58 |
| KXG33181 | Sorghum | golgi, mitochondrion, plastid | 48.04 | 47.06 |
| Zm00001d043768_P001 | Maize | golgi, mitochondrion, plastid | 48.04 | 47.06 |
| TraesCS3D01G258800.1 | Wheat | golgi, mitochondrion, plastid | 48.3 | 46.95 |
| AT5G14550.1 | Thale cress | mitochondrion | 46.21 | 46.95 |
| TraesCS3B01G291600.1 | Wheat | plastid | 48.56 | 44.93 |
| AT4G31350.4 | Thale cress | golgi | 30.03 | 30.59 |
| AT3G21310.1 | Thale cress | golgi | 29.77 | 29.77 |
| AT2G19160.1 | Thale cress | golgi, mitochondrion | 30.55 | 29.7 |
| AT5G11730.1 | Thale cress | golgi | 29.77 | 29.53 |
| AT4G30060.1 | Thale cress | golgi | 30.81 | 29.43 |
| AT1G51770.1 | Thale cress | golgi | 31.07 | 29.31 |
| AT5G25970.2 | Thale cress | golgi | 29.5 | 29.2 |
| AT1G10280.1 | Thale cress | golgi | 31.33 | 29.13 |
| AT5G57270.5 | Thale cress | golgi | 28.98 | 28.61 |
| AT1G10880.1 | Thale cress | golgi | 28.72 | 28.5 |
| AT1G68380.1 | Thale cress | endoplasmic reticulum, golgi, plasma membrane | 28.98 | 28.32 |
| AT4G25870.1 | Thale cress | cytosol, golgi, mitochondrion, plastid | 28.46 | 28.02 |
| AT5G16170.1 | Thale cress | golgi | 29.5 | 27.49 |
| AT1G73810.1 | Thale cress | golgi, nucleus, peroxisome | 29.77 | 27.27 |
| AT1G68390.1 | Thale cress | plastid | 28.72 | 26.96 |
Protein Annotations
| MapMan:35.1 | EntrezGene:837746 | UniProt:A0A178W9L0 | ProteinID:AEE28819.1 | EMBL:AK117631 | ArrayExpress:AT1G11940 |
| EnsemblPlantsGene:AT1G11940 | RefSeq:AT1G11940 | TAIR:AT1G11940 | RefSeq:AT1G11940-TAIR-G | EnsemblPlants:AT1G11940.1 | TAIR:AT1G11940.1 |
| Unigene:At.42103 | EMBL:BT005068 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 | GO:GO:0008375 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016740 | GO:GO:0016757 | InterPro:Glyco_trans_14 | EMBL:KJ139012 | RefSeq:NP_172658.2 | ProteinID:OAP14764.1 |
| PFAM:PF02485 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR31042 |
| PANTHER:PTHR31042:SF2 | UniProt:Q8GYH0 | TMHMM:TMhelix | UniParc:UPI000000C545 | SEG:seg | : |
Description
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q8GYH0]
Coordinates
chr1:-:4031534..4034155
Molecular Weight (calculated)
44418.5 Da
IEP (calculated)
9.451
GRAVY (calculated)
-0.259
Length
383 amino acids
Sequence
(BLAST)
(BLAST)
001: MTKKSQPQIP PPLSRRGGVV WLGWKLVIAF SVALCLLALL RIQLQYNSFT TLSFPLSVAR SQTPLHKYSG DRPKLAFLFL ARRDLPLDFM WDRFFKGVDH
101: ANFSIYIHSV PGFVFNEETT RSQYFYNRQL NNSIKVVWGE SSMIEAERLL LASALEDHSN QRFVLLSDRC APLYDFGYIY KYLISSPRSF VDSFLHTKET
201: RYSVKMSPVI PEEKWRKGSQ WIALIRSHAE VIVNDGIVFP VFKEFCKRCP PLGTNEAWLF LKQKRRNCIP DEHYVQTLLT MQGLESEMER RTVTYTVWNV
301: SGTKYEAKSW HPVTFTLENS GPEEIKEIKK IDHVYYESES RTEWCKADSK PVPCFLFARK FTNEAAMRIV SEGLIGSSAN KTL
101: ANFSIYIHSV PGFVFNEETT RSQYFYNRQL NNSIKVVWGE SSMIEAERLL LASALEDHSN QRFVLLSDRC APLYDFGYIY KYLISSPRSF VDSFLHTKET
201: RYSVKMSPVI PEEKWRKGSQ WIALIRSHAE VIVNDGIVFP VFKEFCKRCP PLGTNEAWLF LKQKRRNCIP DEHYVQTLLT MQGLESEMER RTVTYTVWNV
301: SGTKYEAKSW HPVTFTLENS GPEEIKEIKK IDHVYYESES RTEWCKADSK PVPCFLFARK FTNEAAMRIV SEGLIGSSAN KTL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.