Factsheet for Solyc02g080970.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 3
extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 3
golgi 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	extracellular, golgi, nucleus, plasma membrane, plastid
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	golgi

plastid: 20363867
plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400042390	Potato	golgi	93.09	97.07
Solyc02g036250.1.1	Tomato	cytosol	29.92	74.52
VIT_10s0116g00980.t01	Wine grape	golgi	68.54	70.53
KRH11480	Soybean	mitochondrion	62.4	64.72
AT1G62305.1	Thale cress	golgi	57.29	59.26
KRH36494	Soybean	mitochondrion	63.17	58.67
CDY24895	Canola	mitochondrion	55.24	57.91
Bra034487.1-P	Field mustard	mitochondrion	55.24	57.91
CDY08638	Canola	mitochondrion	55.75	57.52
AT1G11940.1	Thale cress	golgi	56.01	57.18
CDY31228	Canola	golgi	53.96	57.03
CDY21023	Canola	golgi	54.73	56.91
HORVU3Hr1G065000.4	Barley	cytosol	46.8	56.66
Bra016802.1-P	Field mustard	golgi	54.22	56.38
GSMUA_Achr3P28930_001	Banana	golgi	52.69	53.79
GSMUA_Achr9P21910_001	Banana	golgi	52.43	53.11
Os01t0695200-01	Rice	plastid	48.85	52.62
TraesCS3A01G258700.1	Wheat	golgi, mitochondrion, plastid	52.69	52.42
CDY34605	Canola	golgi	50.38	52.12
TraesCS3D01G258800.1	Wheat	golgi, mitochondrion, plastid	52.43	52.03
Zm00001d043768_P001	Maize	golgi, mitochondrion, plastid	50.38	50.38
KXG33181	Sorghum	golgi, mitochondrion, plastid	50.13	50.13
Bra031797.1-P	Field mustard	cytosol	43.22	50.0
TraesCS3B01G291600.1	Wheat	plastid	52.43	49.52
Solyc02g086550.2.1	Tomato	golgi, mitochondrion	45.01	47.06
CDY66259	Canola	cytosol	43.22	39.3
Solyc06g062490.2.1	Tomato	golgi	31.46	33.24
Solyc05g009130.2.1	Tomato	golgi	31.2	32.53
Solyc01g103150.2.1	Tomato	golgi	32.48	31.99
Solyc08g065860.2.1	Tomato	golgi	30.95	31.76
Solyc03g121280.2.1	Tomato	golgi, nucleus, plasma membrane	30.95	31.43
Solyc05g009120.2.1	Tomato	nucleus	30.95	31.03
Solyc07g008940.2.1	Tomato	golgi	30.43	30.28
Solyc12g036400.1.1	Tomato	extracellular	30.95	29.37
Solyc05g009110.1.1	Tomato	golgi	27.62	28.05
Solyc03g119260.2.1	Tomato	golgi, nucleus, plasma membrane	28.9	26.53

Protein Annotations

EnsemblPlants:Solyc02g080970.2.1	EnsemblPlantsGene:Solyc02g080970.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0008375
GO:GO:0016020	GO:GO:0016740	InterPro:Glyco_trans_14	PANTHER:PTHR31042	PANTHER:PTHR31042:SF2	PFAM:PF02485
SEG:seg	TMHMM:TMhelix	UniParc:UPI000276921B	UniProt:K4B9W7	MapMan:35.1	:

Description

No Description!

Coordinates

chr2:-:45037832..45044126

Molecular Weight (calculated)

44729.9 Da

IEP (calculated)

9.616

GRAVY (calculated)

-0.184

Length

391 amino acids

Sequence
(BLAST)

001: MKKKSAAAMA MAATAGMSVR NVLWLWWKLL VLVSLTICVL AFLKLQNYSL SDSELSSSTS SISSRSRALY YTGNPKVAFL FLVRRNLPLD FLWGNFFENA
101: DPGNFSIYVH SEPGFVFDES TTRSTFFYNR QLTNSIKVAW GESSMIHAEK LLLGAALDDP ANQRFVLLSD SCVPLYNFSF IYNYLMASPR SFVDSFLDKK
201: DVRYNPRMSP YIPMSKWRKG SQWITLIRKH AEVVADDDAV FPVFKMFCKR RPALEASKGK KNIKLQKQHN CIPDEHYVQT LLAIHGLEGE LERRTITYTE
301: WNESVTNMEK KGWHPITFSY ADAGPVQIKR IKDIRNVYYE SEYRTEWCRN NSTLAPCFLI ARKFSGGAAM RLLSEGIVSP FDASSMMNLT P

Best Arabidopsis Sequence Match ( AT1G62305.1 )
(BLAST)

001: MPRLPSSRRG VVWFRWKILI TISTALCILA LFCINRQSNS TATTTTLSSS LSVARSRIPL VKYSGDRPKL AFLFLARRDL PLDFLWDRFF KSADQRNFSI
101: YVHSIPGFVF DESSTRSHFF YNRQLKNSIE VVWGESSMIA AERLLLASAL EDPSNQRFVL LSDSCVPLYD FGYIYRYLVS SPKSFVDSFL DKDNRYTMKM
201: FPVIRKEKWR KGSQWISLIR SHAEVIVNDD TVFPVFQKFC KRSLPLDPRK NWLYLKKRRH NCIPDEHYVQ TLLTMRGLEN EMERRTVTYT TWNLSAKKAE
301: AKSWHPLTFT SDNCGPEEIE GIKKINHVYY ESEYRTEWCR ANSKPVPCFL FARKFTRGAA MRLLSEGLIE SSIDTTTF

Arabidopsis Description

At1g62305 [Source:UniProtKB/TrEMBL;Acc:Q6DST3]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.