Factsheet for AT1G68390.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 1
golgi 2
extracellular 1
plasma membrane 2
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	golgi, mitochondrion, plasma membrane, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96025	Canola	golgi, vacuole	84.8	83.17
Bra004303.1-P	Field mustard	golgi, vacuole	84.8	83.17
CDY59035	Canola	golgi	85.54	82.9
CDX81507	Canola	golgi	81.13	80.73
CDY44904	Canola	golgi	80.88	80.49
Bra033941.1-P	Field mustard	golgi	80.88	80.49
AT1G68380.1	Thale cress	endoplasmic reticulum, golgi, plasma membrane	60.54	63.01
AT5G11730.1	Thale cress	golgi	45.1	47.67
AT3G21310.1	Thale cress	golgi	43.38	46.21
AT1G10280.1	Thale cress	golgi	45.34	44.9
AT1G73810.1	Thale cress	golgi, nucleus, peroxisome	45.34	44.26
AT5G25970.2	Thale cress	golgi	41.67	43.93
AT1G51770.1	Thale cress	golgi	43.63	43.84
AT1G10880.1	Thale cress	golgi	41.42	43.78
AT5G16170.1	Thale cress	golgi	42.65	42.34
AT4G31350.4	Thale cress	golgi	32.35	35.11
AT4G25870.1	Thale cress	cytosol, golgi, mitochondrion, plastid	32.11	33.68
AT4G30060.1	Thale cress	golgi	32.84	33.42
AT5G57270.5	Thale cress	golgi	30.88	32.47
AT2G19160.1	Thale cress	golgi, mitochondrion	30.39	31.47
AT5G14550.1	Thale cress	mitochondrion	27.21	29.44
AT1G62305.1	Thale cress	golgi	26.96	29.1
AT1G11940.1	Thale cress	golgi	26.96	28.72

Protein Annotations

MapMan:35.1	EntrezGene:843168	ProteinID:AAF26043.1	ProteinID:AEE34788.1	ArrayExpress:AT1G68390	EnsemblPlantsGene:AT1G68390
RefSeq:AT1G68390	TAIR:AT1G68390	RefSeq:AT1G68390-TAIR-G	EnsemblPlants:AT1G68390.1	TAIR:AT1G68390.1	EMBL:AY735553
EMBL:AY924721	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0008375	GO:GO:0016020
GO:GO:0016021	GO:GO:0016740	GO:GO:0016757	InterPro:Glyco_trans_14	RefSeq:NP_177006.1	PFAM:PF02485
PANTHER:PTHR31042	PANTHER:PTHR31042:SF56	UniProt:Q9M9C4	TMHMM:TMhelix	UniParc:UPI00000AB77F	SEG:seg

Description

Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q9M9C4]

Coordinates

chr1:+:25642534..25645607

Molecular Weight (calculated)

47127.5 Da

IEP (calculated)

8.613

GRAVY (calculated)

-0.362

Length

408 amino acids

Sequence
(BLAST)

001: MKNQKDQNSS SLSSSSPSLT TKLLNAQYHH FLNLLSYSLI LCCGIIIGIL LHSSLQNFSS NSSLSIQRIS QLFIVSSLPP SPPPPPPPSP PSEPEQNGLK
101: SFIEPPEKLM HDMEDEELLW RASMAPKIKN YPFPRTPKVA FMFMTKGHLP LARLWERFFR GHEGLFTIYV HSYPSYNQSD PEDSVFRGRH IPSKRVDWGY
201: VNMVEAEQRL LANALLDISN ERFVLLSESC IPLFNFTTVY SYLINSTQTH VESYDQLGGV GRGRYSPLMQ PHVQLRHWRK GSQWIEVDRA MALEIISDRI
301: YWPLFYSYCH HGCYADEHYI PTLLNIKSSL KRRNSNRTLT WVDWSKGGPH PNRFIRHEVT AEFMENLRSG GECLYNGEET NICYLFARKF LPTALDRLLR
401: LSRTVLHF

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.