Factsheet for TraesCS1D01G115700.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

mitochondrion 3
golgi 4
extracellular 2
plasma membrane 2
endoplasmic reticulum 2
vacuole 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	mitochondrion, secretory
iPSORT:	mitochondrion
MultiLoc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G134300.1	Wheat	golgi	99.49	99.23
TraesCS1A01G114000.1	Wheat	golgi	98.2	97.95
HORVU0Hr1G039960.6	Barley	golgi	64.78	96.92
EES19116	Sorghum	golgi	82.52	84.25
Os05t0170000-02	Rice	golgi	85.09	82.96
VIT_14s0066g00820.t01	Wine grape	cytosol, golgi, mitochondrion, plastid	60.93	73.15
GSMUA_Achr2P14170_001	Banana	mitochondrion	60.67	64.31
CDX69574	Canola	mitochondrion	59.9	63.66
Bra008752.1-P	Field mustard	mitochondrion	59.64	63.39
CDY09869	Canola	mitochondrion	59.64	63.39
KRH56549	Soybean	golgi	59.13	63.19
Solyc02g086550.2.1	Tomato	golgi, mitochondrion	58.87	61.23
KRG93228	Soybean	golgi	58.1	61.08
AT5G14550.1	Thale cress	mitochondrion	59.13	61.01
Zm00001d009810_P003	Maize	mitochondrion, vacuole	83.03	60.83
PGSC0003DMT400001379	Potato	mitochondrion	58.1	53.94
TraesCS3D01G258800.1	Wheat	golgi, mitochondrion, plastid	43.19	42.64
TraesCS1D01G394500.1	Wheat	mitochondrion	26.48	35.27
TraesCS7D01G412700.1	Wheat	golgi	30.85	32.43
TraesCS7D01G476000.1	Wheat	golgi	30.59	31.48
TraesCS2D01G428700.2	Wheat	mitochondrion	30.59	31.32
TraesCS4D01G061000.1	Wheat	golgi, plasma membrane, plastid	31.11	30.87
TraesCS3D01G379500.1	Wheat	golgi	30.85	30.77
TraesCS6D01G143800.1	Wheat	golgi	29.56	29.49
TraesCS7D01G317600.1	Wheat	cytosol, golgi, peroxisome	30.59	29.38
TraesCS1D01G022300.1	Wheat	golgi, plasma membrane, vacuole	28.02	27.88
TraesCS2D01G566600.1	Wheat	cytosol, golgi, plasma membrane	29.56	27.64
TraesCS3D01G042700.1	Wheat	golgi	26.22	25.63
TraesCS5D01G015600.1	Wheat	cytosol, golgi, mitochondrion	28.28	25.0
TraesCS3D01G043200.1	Wheat	golgi, mitochondrion, plasma membrane, plastid	25.45	24.63
TraesCS3D01G042800.2	Wheat	golgi, plasma membrane, plastid	25.71	24.04
TraesCS3D01G043100.1	Wheat	plastid	25.19	23.28

Protein Annotations

EnsemblPlants:TraesCS1D01G115700.1	EnsemblPlantsGene:TraesCS1D01G115700	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0008375
GO:GO:0016020	GO:GO:0016740	InterPro:Glyco_trans_14	PANTHER:PTHR31042	PANTHER:PTHR31042:SF6	PFAM:PF02485
SEG:seg	TMHMM:TMhelix	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr1D:-:111547799..111552380

Molecular Weight (calculated)

44379.7 Da

IEP (calculated)

8.629

GRAVY (calculated)

-0.393

Length

389 amino acids

Sequence
(BLAST)

001: MRPRRHSYGR GGRSAAAAVP LVLCLCVTGV FLLLLHGSSP PLDAEGGKEQ AAAAGGGGRN EEPMVLAEVE EAPLPPGNAR VAFLFIARNR LPLDLVWDAF
101: FRGDNEGRFS IFVHSRPGFV LTRATTRSRF FYNRQVNNSV QVDWGEASMI EAERILLSHA LKDPFNERFV FVSDSCVPLY NFNYTYDYIM SASTSFVDSF
201: ADTKQGRYNP RMDPIIPVEN WRKGSQWAVL IKKHAEVVVY DDVVLPEFKK HCRRRPLPEF WRDWDKPIPA EAWKAHNCIP DEHYVQTLLA QNGLEEELTR
301: RSVTHSAWDL SSSKDRERRG WHPVTYKVSD ATPALIKSIK DIDNIYYETE YRKEWCTSNE RPAPCFLFAR KFTRGAGLKL LNSSFIAAR

Best Arabidopsis Sequence Match ( AT5G14550.1 )
(BLAST)

001: MKKKVSQQKL LYRWKRKVYA TLMFAFCFGT FVFIQARFAS IQARFNRISA SLDSLKKPRL DQRPQIAFLF IARNRLPLEF VWDAFFKGED GKFSIYVHSR
101: PGFVLNEATT RSKYFLDRQL NDSIQVDWGE STMIEAERVL LRHALRDSFN HRFVFLSDSC IPLYSFSYTY NYIMSTPTSF VDSFADTKDS RYNPRMNPII
201: PVRNWRKGSQ WVVLNRKHAE IVVNDTSVFP MFQQHCRRKS LPEFWRDRPV PAEGWKEHNC IPDEHYVQTL LSQKGVDSEL TRRSLTHSAW DLSSSKSNER
301: RGWHPMTYKF SDATPDLIQS IKGIDNINYE TEYRREWCSS KGKPSPCFLF ARKFTRPAAL RLLRETILLE GKEHDNK

Arabidopsis Description

At5g14550 [Source:UniProtKB/TrEMBL;Acc:B6IDH4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.