Factsheet for GSMUA_Achr3P25730_001

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

nucleus 1
extracellular 1
golgi 2
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P14240_001	Banana	golgi	71.31	71.51
PGSC0003DMT400035937	Potato	mitochondrion	53.76	65.65
CDX80552	Canola	cytosol	27.86	65.36
EER93518	Sorghum	golgi, plasma membrane, plastid	68.8	63.99
TraesCS4A01G253400.1	Wheat	golgi, plasma membrane, plastid	68.25	62.66
VIT_09s0002g02660.t01	Wine grape	cytosol	50.7	61.9
TraesCS4D01G061000.1	Wheat	golgi, plasma membrane, plastid	67.41	61.73
TraesCS4B01G062000.1	Wheat	golgi, plasma membrane, plastid	67.41	61.73
VIT_04s0008g00690.t01	Wine grape	golgi, nucleus, plasma membrane, plastid	66.02	61.56
HORVU4Hr1G010270.2	Barley	golgi, peroxisome	67.13	60.25
Zm00001d033892_P001	Maize	endoplasmic reticulum, golgi, plasma membrane	59.89	58.9
CDX88209	Canola	golgi	56.55	58.0
Zm00001d033890_P001	Maize	golgi	67.97	57.96
EER93516	Sorghum	golgi	60.72	57.37
KRH47176	Soybean	cytosol, golgi, plasma membrane	61.56	57.11
KRH05512	Soybean	nucleus	60.45	56.96
Solyc08g065860.2.1	Tomato	golgi	60.45	56.96
EER93517	Sorghum	golgi, mitochondrion, plasma membrane	63.23	56.47
Solyc03g121280.2.1	Tomato	golgi, nucleus, plasma membrane	60.17	56.1
Zm00001d033891_P001	Maize	cytosol, golgi, plasma membrane	62.95	56.08
KRH44223	Soybean	cytosol, golgi, plasma membrane	60.45	56.07
KRH15500	Soybean	nucleus	59.33	56.05
KRH48972	Soybean	cytosol	33.15	55.87
CDX97141	Canola	golgi	59.89	55.7
CDX97139	Canola	golgi	59.89	55.7
AT5G11730.1	Thale cress	golgi	59.89	55.7
PGSC0003DMT400006434	Potato	golgi, nucleus, plasma membrane	59.61	55.44
Bra008941.1-P	Field mustard	golgi	59.33	55.18
KRH13326	Soybean	cytosol	32.59	54.93
CDX69735	Canola	golgi	59.05	54.92
CDX78440	Canola	cytosol	49.3	54.8
Solyc06g062490.2.1	Tomato	golgi	56.27	54.59
PGSC0003DMT400012489	Potato	golgi	56.55	54.42
Bra009874.1-P	Field mustard	golgi	57.38	53.37
AT3G21310.1	Thale cress	golgi	56.82	53.26
AT5G25970.2	Thale cress	golgi	57.38	53.23
GSMUA_Achr8P29190_001	Banana	cytosol	40.39	53.11
Bra006113.1-P	Field mustard	golgi	57.1	53.11
GSMUA_Achr6P09800_001	Banana	cytosol	40.67	52.52
Bra031273.1-P	Field mustard	golgi	55.71	52.49
AT1G51770.1	Thale cress	golgi	59.33	52.46
Bra006114.1-P	Field mustard	golgi	52.09	52.23
CDY51451	Canola	golgi	55.43	52.23
CDX87842	Canola	golgi	56.55	52.19
GSMUA_Achr1P04590_001	Banana	cytosol	43.73	51.82
CDY43927	Canola	golgi	55.99	51.67
Bra030418.1-P	Field mustard	golgi	55.99	51.67
GSMUA_Achr7P23520_001	Banana	cytosol	42.34	51.53
CDX97140	Canola	golgi	58.77	51.46
GSMUA_Achr1P04580_001	Banana	cytosol	42.34	51.35
CDY56916	Canola	cytosol, golgi, plasma membrane, plastid	54.32	51.18
CDX78439	Canola	golgi	57.1	51.12
CDX70417	Canola	cytosol	42.62	51.0
GSMUA_Achr8P31730_001	Banana	cytosol	38.72	50.73
Os03t0731050-00	Rice	plastid	60.17	50.47
CDX70416	Canola	golgi	56.27	46.22
GSMUA_Achr8P08460_001	Banana	golgi	43.45	42.98
GSMUA_Achr5P01370_001	Banana	golgi	41.23	40.44
GSMUA_Achr10P...	Banana	cytosol	31.2	39.86
GSMUA_Achr7P08690_001	Banana	endoplasmic reticulum, golgi	31.48	38.18
GSMUA_Achr11P...	Banana	cytosol	30.92	38.14
GSMUA_Achr8P32350_001	Banana	golgi, mitochondrion	41.78	37.69
GSMUA_Achr5P24160_001	Banana	mitochondrion	36.77	37.61
GSMUA_Achr4P12520_001	Banana	golgi	37.05	34.02
GSMUA_Achr4P05750_001	Banana	golgi	34.82	31.97
GSMUA_Achr2P14170_001	Banana	mitochondrion	28.97	28.34
GSMUA_Achr3P28930_001	Banana	golgi	28.69	26.89
GSMUA_Achr9P21910_001	Banana	golgi	28.13	26.17

Protein Annotations

EnsemblPlants:GSMUA_Achr3P25730_001	EnsemblPlants:GSMUA_Achr3T25730_001	EnsemblPlantsGene:GSMUA_Achr3G25730_001	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0008375	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	InterPro:Glyco_trans_14	PANTHER:PTHR31042
PANTHER:PTHR31042:SF54	PFAM:PF02485	SEG:seg	TMHMM:TMhelix	UniParc:UPI000295F9A5	UniProt:M0SHT9
MapMan:35.1	:	:	:	:	:

Description

DNA binding protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G25730_001]

Coordinates

chr3:-:25814286..25817943

Molecular Weight (calculated)

40868.6 Da

IEP (calculated)

9.894

GRAVY (calculated)

-0.132

Length

359 amino acids

Sequence
(BLAST)

001: MQLRVSSFED VKESAQPRAA QPRVFPLPLL KIFLPLFALV AVGFSVFGVY VTRRIGVLPA AAVGGLFRPL CVEEPPSLDR WVRPPADLMH SMNDEELFWR
101: ASWVPQVKKY PFKRVPKVAF MFLTRGPLPL SPLWEKFFRG HEGRYSIYVH ALPSYQANFT SASVFYERQI PSKVSEWGQM SMCDAERRLL ANALLDISNE
201: CFVGVTDDRG PYGRGRYNAS MAPEVTIEQW RKGSQWFQVK RKLAVSIIKD TTYYPKFEKF CRPHCYVDEH YFPTMLAIQS PNLLANRSLS WVDWSRGGAH
301: PATFGKVDVT EAFLKRIIGG RNCSYNDQPS RICYLFARKF APSSLGPLLQ LAPIPLGLG

Best Arabidopsis Sequence Match ( AT1G51770.2 )
(BLAST)

001: MKVMVMEMEE CVKENGSSTP KSRVTNQSRA LLPLRLLQIL LLFLVLTLGI SVVSIHMIKF LKIQRLDPVA PITLLSTYNH ESVTLDSFIR PPSNVWHTMN
101: DSELLWRASI EPQRNGYPFR RVPKLAFMFL AKGPLPFAPL WEKFCKGHEG LYSIYVHSLP SYKSDFSRSS VFYRRYIPSQ AVAWGEMSMG EAERRLLANA
201: LLDISNECFM GAADEEGPDG RGRYRTEMEP EITLSQWRKG SQWFEINRKL AVEIVQDTTY YPKFKEFCRP PCYVDEHYFP TMLSMKHRVL LANRTLTWTD
301: WSRGGAHPAT FGKADVTESF LKKLTGAKSC LYNDHQSQIC YLFARKFAPS ALEPLLQLAP KILELGSNIS STRHSWYLF

Arabidopsis Description

Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q1G300]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.