Factsheet for GSMUA_Achr1P04580_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
peroxisome 1
mitochondrion 2
plastid 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P04590_001	Banana	cytosol	66.89	65.35
GSMUA_Achr8P29190_001	Banana	cytosol	47.3	51.28
GSMUA_Achr7P23520_001	Banana	cytosol	48.31	48.47
GSMUA_Achr6P09800_001	Banana	cytosol	45.27	48.2
GSMUA_Achr8P31730_001	Banana	cytosol	44.59	48.18
HORVU5Hr1G077980.1	Barley	cytosol, plastid	28.04	45.36
GSMUA_Achr1P14240_001	Banana	golgi	54.73	45.25
GSMUA_Achr3P25730_001	Banana	golgi	51.35	42.34
TraesCS3B01G478200.1	Wheat	mitochondrion	48.99	41.08
Zm00001d031187_P002	Maize	plastid	54.39	40.45
GSMUA_Achr8P08460_001	Banana	golgi	48.31	39.39
Os12t0635500-01	Rice	golgi, plasma membrane, plastid	53.72	39.07
GSMUA_Achr10P...	Banana	cytosol	36.82	38.79
Zm00001d041221_P001	Maize	golgi, mitochondrion, plasma membrane, plastid	51.69	38.64
KXG24124	Sorghum	cytosol, golgi, plasma membrane, plastid	53.04	38.57
GSMUA_Achr7P08690_001	Banana	endoplasmic reticulum, golgi	38.51	38.51
GSMUA_Achr5P01370_001	Banana	golgi	46.96	37.98
GSMUA_Achr11P...	Banana	cytosol	36.15	36.77
HORVU5Hr1G001380.1	Barley	endoplasmic reticulum, golgi, peroxisome, plastid	50.0	36.1
TraesCS5B01G008600.1	Wheat	endoplasmic reticulum, golgi, peroxisome	50.34	35.9
HORVU5Hr1G078030.1	Barley	cytosol, golgi, peroxisome, plastid	49.66	35.17
GSMUA_Achr8P32350_001	Banana	golgi, mitochondrion	46.96	34.92
TraesCS5A01G010800.1	Wheat	endoplasmic reticulum, golgi, peroxisome, plastid	48.99	34.52
GSMUA_Achr5P24160_001	Banana	mitochondrion	40.88	34.47
HORVU5Hr1G001360.2	Barley	endoplasmic reticulum, golgi, peroxisome, plastid	43.24	33.86
TraesCS5D01G015600.1	Wheat	cytosol, golgi, mitochondrion	50.0	33.64
GSMUA_Achr4P12520_001	Banana	golgi	41.22	31.2
GSMUA_Achr4P05750_001	Banana	golgi	38.85	29.41
GSMUA_Achr2P14170_001	Banana	mitochondrion	34.8	28.07
GSMUA_Achr9P21910_001	Banana	golgi	36.49	27.98
GSMUA_Achr3P28930_001	Banana	golgi	33.78	26.11

Protein Annotations

EnsemblPlants:GSMUA_Achr1P04580_001	EnsemblPlants:GSMUA_Achr1T04580_001	EnsemblPlantsGene:GSMUA_Achr1G04580_001	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0008375	GO:GO:0016020	GO:GO:0016740	InterPro:Glyco_trans_14	PANTHER:PTHR31042	PANTHER:PTHR31042:SF54
PFAM:PF02485	UniParc:UPI000296CDBE	UniProt:M0RX16	MapMan:35.1	:	:

Description

DNA binding protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr1G04580_001]

Coordinates

chr1:+:3795462..3800249

Molecular Weight (calculated)

33680.3 Da

IEP (calculated)

9.369

GRAVY (calculated)

-0.264

Length

296 amino acids

Sequence
(BLAST)

001: MHNMSDGELF QRAMDVSQLS RHRLGMVPKI AFMFLTKGAL PLSPLWEKYF AGHSGLYSIY IHPRPSYHAD NASSSVFYRR QIPSKVVNWG SLSLVDAERR
101: LLANALLDLS NERFVLLSES CIPLFNFSFT YQHLMSSRYS FVDAFDEPGP AARGRYQPKL APEINVTEWR KGAQWFEASR QVAVIVVNET HYYAKFDELR
201: DAGLPGVHRI LHRMKTLAPH LIANRTLTWA YWTGGPHPET FGKDDVSDGF LRKINQEKNC SYNDQPSTVC YLFARKFAPS ALEPLLKLAP TSLGFG

Best Arabidopsis Sequence Match ( AT5G11730.1 )
(BLAST)

001: MQNRIVQLEE GKENGITVRS GHYKGFPSKL LLLLGLFLTF SVTVFIISVS TIKYTGIQSV VTTVTSSFVP CREGEPNSLS KWIQPPAVLM HNMSDEELLW
101: RASFWPRRKE YPFKRVPKVA FMFLTKGPLP LASLWERFLK GHKGLYSVYL HPHPSFTAKF PASSVFHRRQ IPSQVAEWGR MSMCDAEKRL LANALLDVSN
201: EWFVLVSESC IPLYNFTTIY SYLSRSKHSF MGAFDDPGPF GRGRYNGNME PEVPLTKWRK GSQWFEVNRD LAATIVKDTL YYPKFKEFCR PACYVDEHYF
301: PTMLTIEKPT VLANRSLTWV DWSRGGPHPA TFGRSDITEN FFGKIFDGRN CSYNGRNTSM CYLFARKFAP SALEPLLHIA PKILGF

Arabidopsis Description

At5g11730 [Source:UniProtKB/TrEMBL;Acc:Q9LYF7]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.