CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92736	Canola	mitochondrion	97.1	97.1
CDX89388	Canola	cytosol	56.73	94.3
Bra019138.1-P	Field mustard	plastid	96.31	93.59
CDX94406	Canola	golgi	89.97	89.97
AT4G25870.1	Thale cress	cytosol, golgi, mitochondrion, plastid	89.18	86.89
CDY49466	Canola	cytosol	56.73	83.66
CDY66012	Canola	mitochondrion	74.41	77.26
CDY57290	Canola	cytosol	68.87	75.43
CDY25922	Canola	golgi	75.46	73.52
CDY38285	Canola	golgi	75.46	73.52
CDX88613	Canola	golgi	74.93	73.01
CDY11878	Canola	golgi	74.67	72.75
CDY46724	Canola	mitochondrion	62.27	58.56
CDY30178	Canola	mitochondrion	62.01	58.46
CDY03361	Canola	mitochondrion	60.16	57.72
CDY66853	Canola	mitochondrion	59.63	57.07
CDY03552	Canola	golgi, mitochondrion	60.16	56.86
CDX83505	Canola	mitochondrion	59.37	56.53
CDY12850	Canola	mitochondrion	59.37	56.53
CDY01412	Canola	mitochondrion	59.37	56.39
HORVU2Hr1G100480.3	Barley	cytosol	48.02	56.0
Solyc07g008940.2.1	Tomato	golgi	57.78	55.73
PGSC0003DMT400073984	Potato	golgi	57.52	55.47
KRH19073	Soybean	golgi	56.99	54.96
VIT_11s0103g00490.t01	Wine grape	golgi, plastid	57.52	54.09
Zm00001d024348_P002	Maize	mitochondrion	52.51	53.78
CDX82625	Canola	mitochondrion	55.94	53.67
CDY51089	Canola	golgi, mitochondrion	55.41	53.16
Zm00001d026261_P001	Maize	golgi, mitochondrion	52.77	52.22
KXG24737	Sorghum	golgi	52.51	51.96
KRH02808	Soybean	golgi	57.26	51.67
EES12818	Sorghum	golgi	52.24	51.16
CDX68738	Canola	golgi	50.13	50.53
CDY28259	Canola	golgi	50.13	50.53
TraesCS2D01G428700.2	Wheat	mitochondrion	50.66	50.53
Zm00001d002382_P002	Maize	golgi, mitochondrion	51.19	50.13
TraesCS2B01G452200.4	Wheat	mitochondrion	50.13	50.0
TraesCS2A01G430900.2	Wheat	mitochondrion	49.87	48.96
Os08t0225400-01	Rice	cytosol, golgi	52.51	48.18
CDY14193	Canola	mitochondrion	60.69	43.89
CDX80552	Canola	cytosol	15.83	39.22
CDX78440	Canola	cytosol	32.72	38.39
CDX73016	Canola	mitochondrion	33.77	36.89
CDX69735	Canola	golgi	36.15	35.49
CDX70417	Canola	cytosol	27.97	35.33
CDY43927	Canola	golgi	35.88	34.96
CDX87842	Canola	golgi	35.62	34.7
CDX78439	Canola	golgi	36.68	34.66
CDY51451	Canola	golgi	34.83	34.65
CDX97141	Canola	golgi	35.09	34.46
CDX97139	Canola	golgi	35.09	34.46
CDY19328	Canola	golgi, mitochondrion	33.77	33.86
CDX88209	Canola	golgi	30.87	33.43
CDY56916	Canola	cytosol, golgi, plasma membrane, plastid	33.51	33.33
CDX93443	Canola	golgi	33.25	32.81
CDY31036	Canola	golgi	32.45	32.63
CDX78674	Canola	cytosol, golgi, plasma membrane	34.56	32.51
CDX94911	Canola	golgi	32.98	32.47
CDX96025	Canola	golgi, vacuole	35.36	32.21
CDX97140	Canola	golgi	34.83	32.2
CDY59035	Canola	golgi	35.62	32.07
CDY20644	Canola	golgi	32.98	32.05
CDX69465	Canola	golgi	34.04	31.85
CDX70676	Canola	cytosol, golgi, nucleus	33.77	31.84
CDX70416	Canola	golgi	36.15	31.35
CDX81507	Canola	golgi	33.77	31.22
CDY20597	Canola	golgi	27.97	31.18
CDY44904	Canola	golgi	33.51	30.98
CDX96026	Canola	golgi	32.19	30.81
CDY24895	Canola	mitochondrion	29.82	30.29
CDY08638	Canola	mitochondrion	30.08	30.08
CDX69574	Canola	mitochondrion	29.02	30.05
CDY09869	Canola	mitochondrion	28.5	29.51
CDY21023	Canola	golgi	28.23	28.46
CDY31228	Canola	golgi	27.7	28.38
CDY34605	Canola	golgi	28.23	28.31
CDY26504	Canola	cytosol	11.08	27.63
CDY70337	Canola	golgi	25.59	26.01
CDY66259	Canola	cytosol	24.27	21.4
CDX97918	Canola	golgi	32.45	19.49
CDX73017	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDY42774	EnsemblPlantsGene:GSBRNA2T00075331001	GO:A0A078HZK2	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0008375	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	InterPro:Glyco_trans_14	PANTHER:PTHR31042
PANTHER:PTHR31042:SF1	PFAM:PF02485	ProteinID:CDY42774	ProteinID:CDY42774.1	SEG:seg	TMHMM:TMhelix
UniParc:UPI0004EF1F12	UniProt:A0A078HZK2	MapMan:35.1	:	:	:

Description

BnaA03g47650DBnaA03g47650D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HZK2]

Coordinates

chrLK032533:+:260767..262634

Molecular Weight (calculated)

43978.3 Da

IEP (calculated)

6.769

GRAVY (calculated)

-0.370

Length

379 amino acids

Sequence
(BLAST)

001: MVEAQKNYQG PPRHHTSLKK PLWLVLSVSV FSMLLICTRM SPRHSNNSSK ALSSWLPVHV RKHTDEEVAA RAVVRDILKT PPFVTENSKI AFLFLTPGTL
101: PFEKLWDEFF TGHEGKFSIY IHPSKERPVH ISSHFSDREI HSDEVTWGRI SMVDAEKRLL VSALEDPDNQ HFVLLSESCI PLHTFDYTYR YLLYSNVSFI
201: ESFVDPGPHG TGRHMEHMLP EIAREDFRKG AQWFTMKRQH AVIVMADGLY YSRFREYCGP GIEADKNCIA DEHYLPTFFS MIDPMGISNW SVTYVDWSER
301: QWHPKTHTAN EISLEFMKNV TTEEMSTHVT SVGEHGDELH WPCTWNGIRR PCYLFARKFH PDTLDTLVNL FPNYTSTVI

Best Arabidopsis Sequence Match ( AT4G25870.1 )
(BLAST)

001: MGETQKILQG PRHHTSLKKP LWVVLTVSVT SMLLICTHMY PKHGKSSSCH GLYSTRGCED ALSKWLPVHV RKFTDEEIAA RAVVRDILRT PPFITNNSKI
101: AFLFLTPGTL PFEKLWDEFF KGHEGKFSIY IHPSKERPVH ISRHFSDREI HSDEVTWGRI SMVDAEKRLL VSALEDPDNQ HFVLVSESCI PLHTFDYTYR
201: YLLYSNVSFI ESFVDPGPHG TGRHMEHMLP EIAKEDFRKG AQWFTMKRQH AIIVMADGLY YSKFREYCGP GIEADKNCIA DEHYLPTFFN MIDPMGISNW
301: SVTFVDWSER RWHPKTYGGN EISLEFMKNV TSEDMSVHVT SVGKHGDELH WPCTWNGIKR PCYLFARKFH PDTLDTLVNL FPNYTNTAV

Arabidopsis Description

At4g25870 [Source:UniProtKB/TrEMBL;Acc:Q9SVZ8]
SUBAcon: [mitochondrion,golgi,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.