CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
plastid 1
mitochondrion 5
golgi 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY12850	Canola	mitochondrion	100.0	100.0
CDY01412	Canola	mitochondrion	99.75	99.5
Bra012167.1-P	Field mustard	mitochondrion	99.5	99.25
CDY03361	Canola	mitochondrion	87.69	88.35
CDY66853	Canola	mitochondrion	87.44	87.88
AT2G19160.1	Thale cress	golgi, mitochondrion	86.18	87.06
CDX82625	Canola	mitochondrion	81.66	82.28
CDY51089	Canola	golgi, mitochondrion	81.66	82.28
CDY03552	Canola	golgi, mitochondrion	74.37	73.82
CDY30178	Canola	mitochondrion	73.37	72.64
CDY46724	Canola	mitochondrion	72.86	71.96
CDX89388	Canola	cytosol	37.44	65.35
KRH19073	Soybean	golgi	63.57	64.38
PGSC0003DMT400073984	Potato	golgi	62.06	62.85
Solyc07g008940.2.1	Tomato	golgi	62.06	62.85
CDY49466	Canola	cytosol	39.2	60.7
KRH02808	Soybean	golgi	63.57	60.24
CDY38285	Canola	golgi	58.04	59.38
CDX88613	Canola	golgi	58.04	59.38
CDY25922	Canola	golgi	58.04	59.38
CDY42774	Canola	mitochondrion	56.53	59.37
CDX94406	Canola	golgi	56.53	59.37
CDY11878	Canola	golgi	57.79	59.13
VIT_11s0103g00490.t01	Wine grape	golgi, plastid	59.8	59.06
CDX92736	Canola	mitochondrion	55.78	58.58
HORVU2Hr1G100480.3	Barley	cytosol	46.98	57.54
Zm00001d024348_P002	Maize	mitochondrion	53.27	57.3
KXG24737	Sorghum	golgi	55.03	57.18
CDY14193	Canola	mitochondrion	75.13	57.06
CDX68738	Canola	golgi	52.76	55.85
CDY28259	Canola	golgi	52.76	55.85
Zm00001d026261_P001	Maize	golgi, mitochondrion	53.52	55.61
EES12818	Sorghum	golgi	53.52	55.04
Zm00001d002382_P002	Maize	golgi, mitochondrion	53.27	54.78
TraesCS2D01G428700.2	Wheat	mitochondrion	52.26	54.74
TraesCS2B01G452200.4	Wheat	mitochondrion	52.01	54.47
CDY66012	Canola	mitochondrion	49.75	54.25
TraesCS2A01G430900.2	Wheat	mitochondrion	52.01	53.63
Os08t0225400-01	Rice	cytosol, golgi	53.77	51.82
CDY57290	Canola	cytosol	43.72	50.29
CDX80552	Canola	cytosol	15.58	40.52
CDX78440	Canola	cytosol	31.91	39.32
CDY43927	Canola	golgi	36.68	37.53
CDX87842	Canola	golgi	36.68	37.53
CDX73016	Canola	mitochondrion	32.66	37.46
CDX70417	Canola	cytosol	27.39	36.33
CDX97141	Canola	golgi	34.67	35.75
CDX97139	Canola	golgi	34.67	35.75
CDX69735	Canola	golgi	34.42	35.49
CDY51451	Canola	golgi	32.66	34.12
CDX88209	Canola	golgi	29.9	34.0
CDY19328	Canola	golgi, mitochondrion	32.16	33.86
CDY24895	Canola	mitochondrion	31.66	33.78
CDY08638	Canola	mitochondrion	32.16	33.77
CDX78439	Canola	golgi	33.92	33.67
CDY56916	Canola	cytosol, golgi, plasma membrane, plastid	32.16	33.6
CDX97140	Canola	golgi	34.42	33.41
CDY31036	Canola	golgi	30.9	32.63
CDX69574	Canola	mitochondrion	29.65	32.24
CDY31228	Canola	golgi	29.9	32.16
CDX93443	Canola	golgi	30.9	32.03
CDY34605	Canola	golgi	30.4	32.01
CDY09869	Canola	mitochondrion	29.4	31.97
CDX94911	Canola	golgi	30.9	31.95
CDY21023	Canola	golgi	30.15	31.91
CDY20644	Canola	golgi	30.9	31.54
CDY20597	Canola	golgi	26.88	31.47
CDX96026	Canola	golgi	31.16	31.31
CDX70676	Canola	cytosol, golgi, nucleus	31.41	31.09
CDX78674	Canola	cytosol, golgi, plasma membrane	31.41	31.02
CDY26504	Canola	cytosol	11.81	30.92
CDX69465	Canola	golgi	31.41	30.86
CDX96025	Canola	golgi, vacuole	32.16	30.77
CDX81507	Canola	golgi	31.66	30.73
CDY44904	Canola	golgi	31.41	30.49
CDY59035	Canola	golgi	32.16	30.4
CDX70416	Canola	golgi	33.17	30.21
CDY70337	Canola	golgi	24.87	26.54
CDY66259	Canola	cytosol	27.14	25.12
CDX97918	Canola	golgi	31.16	19.65
CDX73017	Canola	cytosol	0.5	14.29

Protein Annotations

EnsemblPlants:CDX83505	EnsemblPlantsGene:GSBRNA2T00139098001	GO:A0A078D300	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0008375	GO:GO:0016020	GO:GO:0016740	InterPro:Glyco_trans_14	PANTHER:PTHR31042	PANTHER:PTHR31042:SF1
PFAM:PF02485	ProteinID:CDX83505	ProteinID:CDX83505.1	ProteinID:CDY12850.1	SEG:seg	TMHMM:TMhelix
UniParc:UPI0004EEB023	UniProt:A0A078D300	MapMan:35.1	:	:	:

Description

BnaA03g20010DBnaA03g20010D protein [Source:UniProtKB/TrEMBL;Acc:A0A078D300]

Coordinates

chrLK031832:+:1847769..1850294

Molecular Weight (calculated)

45913.3 Da

IEP (calculated)

8.159

GRAVY (calculated)

-0.295

Length

398 amino acids

Sequence
(BLAST)

001: MKAVKGWRLC GTSYMQSLPG ARHHRAPPTT RKPVWIMAVV SLITMFVIGG YVFPHHRRAA CYMFSSKGCK GLTDWLPPSP RELSDDEVAA RVVIREILSS
101: PRVIKKTSKI AFMFLTPGTL PFEKLWDLFF QGHEGKFSVY IHASKDTPVH TSRYFLNREI RSDEVVWGRI SMIDAERRLL TSALRDPENQ QFVLLSDSCV
201: PLRSFDYMYN YMMYSNVSNV DCFDDPGPHG IGRHMDHMLP EIPKEDFRKG SQWFSMTRQH AVMTMADSLY YSKFRDYCGP GVESNKNCIA DEHYLPTFFY
301: MLDPGGIANW TLTYVDWSEG KWHPRTFMPE DVSHELLKNL TSIDAVSRVT SEGTGIVTWT QCMWNGIKRP CYLFGRKFHA DALDKLMDLF PMYTSGFD

Best Arabidopsis Sequence Match ( AT2G19160.2 )
(BLAST)

001: MKAIKGWRLG KINYMQSLPG ARHRAPTRKP IWIIAVLSLI AMFVIGAYMF PHHSKAACYM FSSKGCKGLT DWLPPSLREY SDDEIAARVV ISEILSSPRV
101: IKKSSKIAFM FLTPGTLPFE KLWDLFFQGH EGKFSVYIHA SKDTPVHTSR YFLNREIRSD EVVWGRISMI DAERRLLTNA LRDPENQQFV LLSDSCVPLR
201: SFEYMYNYMM HSNVSYVDCF DDPGPHGTGR HMDHMLPEIP REDFRKGAQW FSMKRQHAVV TVADNLYYSK FRDYCGPGVE GNKNCIADEH YLPTFFYMLD
301: PTGIANWTVT YVDWSERKWH PRKYMPEDIT LELIKNISSI DAVSRVTSEK NGVVSWTHCM WNGIKRPCYL FGRKFHADTL DKLMELFPNY TSIV

Arabidopsis Description

At2g19160 [Source:UniProtKB/TrEMBL;Acc:Q8W460]
SUBAcon: [mitochondrion,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.