CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	peroxisome
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73678
CDX92401
CDX95314
CDY06478
CDY23174

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G18950.1	CDX73678	AT3G51920.1	17360592
AT4G18950.1	CDX95314	AT3G51920.1	17360592
AT4G18950.1	CDY23174	AT3G51920.1	17360592
AT4G18950.1	CDY06478	AT4G14640.1	17360592
AT4G18950.1	CDX92401	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78907	Canola	cytosol	99.35	99.35
AT4G18950.1	Thale cress	cytosol	94.34	94.34
CDX76504	Canola	cytosol	89.11	89.11
KRH11091	Soybean	nucleus	67.97	68.42
KRH21151	Soybean	nucleus	67.32	67.91
VIT_10s0003g02060.t01	Wine grape	cytosol	66.67	66.23
PGSC0003DMT400073140	Potato	cytosol	65.8	65.51
Solyc03g005920.2.1	Tomato	cytosol	65.8	65.37
Solyc02g071740.2.1	Tomato	cytosol	65.58	65.29
PGSC0003DMT400035023	Potato	cytosol	65.58	65.15
GSMUA_Achr6P26030_001	Banana	cytosol	64.71	64.01
GSMUA_Achr2P09520_001	Banana	cytosol	62.75	62.61
GSMUA_Achr7P24910_001	Banana	cytosol	61.87	61.21
CDY00588	Canola	mitochondrion	60.35	59.19
CDX89004	Canola	mitochondrion	60.13	58.97
CDX71924	Canola	mitochondrion	58.82	57.94
Os01t0748600-02	Rice	cytosol	58.39	57.27
HORVU3Hr1G071430.7	Barley	cytosol	58.17	56.93
TraesCS3B01G306500.1	Wheat	nucleus	58.17	56.57
TraesCS3D01G272300.1	Wheat	cytosol	58.17	56.57
TraesCS3A01G272900.1	Wheat	nucleus	57.73	56.5
Zm00001d043459_P005	Maize	cytosol	50.76	56.01
EES03608	Sorghum	cytosol	57.08	55.39
GSMUA_Achr9P00030_001	Banana	cytosol	23.75	54.5
GSMUA_Achr9P00040_001	Banana	mitochondrion	42.27	49.62
CDY19106	Canola	mitochondrion	28.54	43.52
CDY15369	Canola	cytosol	27.45	42.86
CDX71872	Canola	cytosol, plastid	44.01	42.17
CDX67815	Canola	plastid	43.57	42.02
CDX98397	Canola	plastid	43.57	42.02
CDY05975	Canola	nucleus, plastid	43.57	41.75
CDY36424	Canola	cytosol	37.91	40.09
CDX84758	Canola	mitochondrion	42.05	39.71
CDX79441	Canola	mitochondrion	42.05	39.71
CDX98142	Canola	cytosol	37.47	39.63
CDY33786	Canola	cytosol	37.69	39.5
CDY16124	Canola	cytosol	37.47	39.27
CDY19105	Canola	cytosol	14.38	37.93
CDY15368	Canola	mitochondrion	14.6	37.02
CDY49253	Canola	cytosol	59.7	25.18
CDX71868	Canola	extracellular	9.59	11.34
CDX71869	Canola	cytosol	1.96	2.75
CDX71871	Canola	cytosol	1.96	2.55

Protein Annotations

Gene3D:1.10.510.10	Gene3D:1.25.40.20	MapMan:18.4.1.30	GO:A0A078EEC1	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom
InterPro:Ankyrin_rpt-contain_sf	EnsemblPlants:CDX99407	ProteinID:CDX99407	ProteinID:CDX99407.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004672	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0006464
GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016310
GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00107732001	InterPro:IPR000719	InterPro:IPR002110	InterPro:IPR020683
InterPro:IPR036770	InterPro:Kinase-like_dom_sf	PFAM:PF07714	PFAM:PF12796	PIRSF:PIRSF000654	PRINTS:PR00109
PFscan:PS50011	PFscan:PS50088	PFscan:PS50297	PANTHER:PTHR44023	PANTHER:PTHR44023:SF7	InterPro:Prot_kinase_dom
SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF56112	InterPro:Ser-Thr/Tyr_kinase_cat_dom	UniParc:UPI0004EB7DFE	SEG:seg

Description

BnaC01g11450D

Coordinates

chrLK031910:-:505293..508103

Molecular Weight (calculated)

52516.7 Da

IEP (calculated)

5.831

GRAVY (calculated)

-0.558

Length

459 amino acids

Sequence
(BLAST)

001: MEDDYQTPRF TIGRQSSMAP EKIPEPSIHS EEEVLEDGEE IDGGVRLMYL CNEGDVEGIK ELLDSGIDAN YRDIDDRTAL HVAACQGLKD VVEILLDRGA
101: DVDPKDRWGS TPLADAIFYK NVDVIKILET HGAKHPMAPM HVKTPREVPE YEINPSELDF TQSKEITKGT YCMAMWRGIQ VAVKKLDDKV LSDEDQVRKF
201: HDELALLQRL RHPNIVQFLG AVTQSNPMMI VTEYLPRGDL RELLKRKVQL KPATAVRYAL DIARGMSYLH EIKGDPIIHR DLEPSNILRD DTGHLKVADF
301: GVSKLVTVKE DKPFTCLDTS CRYIAPEVFT SEEYDTKADV FSFALIVQEM IEGRMPFAEK EDSEASEAYA SKERPLFKAP SKLYPHGLKT LIEECWQDKP
401: AKRPTFREII KRLESILHHM GHKRQWRMRP LTCFQNFEHK KKHNWDMSSH DGSSSGSHL

Best Arabidopsis Sequence Match ( AT4G18950.1 )
(BLAST)

001: MEEDYQQPRF TIGRQSSMAP EKIPEPSVHS EEEVFEDGEE IDGGVRLMYL ANEGDIEGIK ELIDSGIDAN YRDIDDRTAL HVAACQGLKD VVELLLDRKA
101: EVDPKDRWGS TPFADAIFYK NIDVIKILEI HGAKHPMAPM HVKTAREVPE YEINPSELDF TQSKEITKGT YCMAMWRGIQ VAVKKLDDEV LSDDDQVRKF
201: HDELALLQRL RHPNIVQFLG AVTQSNPMMI VTEYLPRGDL RELLKRKGQL KPATAVRYAL DIARGMSYLH EIKGDPIIHR DLEPSNILRD DSGHLKVADF
301: GVSKLVTVKE DKPFTCQDIS CRYIAPEVFT SEEYDTKADV FSFALIVQEM IEGRMPFAEK EDSEASEAYA GKHRPLFKAP SKNYPHGLKT LIEECWHEKP
401: AKRPTFREII KRLESILHHM GHKRQWRMRP LTCFQNFEHK KKHNWDLSSH DGSSSGSHL

Arabidopsis Description

At4g18950/F13C5_120 [Source:UniProtKB/TrEMBL;Acc:Q93Z30]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.