CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
peroxisome 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	peroxisome
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89812
KRG94975
KRH18664
KRH31638
KRH69070

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G18950.1	KRG89812	AT2G41090.1	17360592
AT4G18950.1	KRG94975	AT2G41090.1	17360592
AT4G18950.1	KRH18664	AT2G41090.1	17360592
AT4G18950.1	KRG89812	AT2G41100.1	17360592
AT4G18950.1	KRG94975	AT2G41100.1	17360592
AT4G18950.1	KRH18664	AT2G41100.1	17360592
AT4G18950.1	KRH31638	AT4G14640.1	17360592
AT4G18950.1	KRH69070	AT4G14640.1	17360592
AT4G18950.1	KRG89812	AT5G21274.1	17360592
AT4G18950.1	KRG94975	AT5G21274.1	17360592
AT4G18950.1	KRH18664	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11091	Soybean	nucleus	96.48	96.27
VIT_10s0003g02060.t01	Wine grape	cytosol	75.6	74.46
PGSC0003DMT400073140	Potato	cytosol	72.53	71.58
Solyc02g071740.2.1	Tomato	cytosol	72.31	71.37
PGSC0003DMT400035023	Potato	cytosol	72.09	71.0
Solyc03g005920.2.1	Tomato	cytosol	72.09	71.0
KRH73700	Soybean	cytosol	70.55	70.7
GSMUA_Achr6P26030_001	Banana	cytosol	71.65	70.26
KRH14455	Soybean	cytosol, mitochondrion	69.89	70.2
Bra020982.1-P	Field mustard	cytoskeleton, cytosol, peroxisome	62.86	69.42
GSMUA_Achr2P09520_001	Banana	cytosol	68.79	68.04
AT4G18950.1	Thale cress	cytosol	67.91	67.32
CDX99407	Canola	cytosol	67.91	67.32
Bra013363.1-P	Field mustard	cytosol	67.91	67.32
CDX78907	Canola	cytosol	67.69	67.1
CDX76504	Canola	cytosol	67.03	66.45
GSMUA_Achr7P24910_001	Banana	cytosol	67.69	66.38
Os01t0748600-02	Rice	cytosol	63.74	61.97
EES03608	Sorghum	cytosol	62.64	60.25
Zm00001d043459_P005	Maize	cytosol	54.73	59.86
HORVU3Hr1G071430.7	Barley	cytosol	61.32	59.49
TraesCS3A01G272900.1	Wheat	nucleus	61.1	59.28
TraesCS3D01G272300.1	Wheat	cytosol	61.32	59.11
TraesCS3B01G306500.1	Wheat	nucleus	61.1	58.9
GSMUA_Achr9P00030_001	Banana	cytosol	24.62	56.0
GSMUA_Achr9P00040_001	Banana	mitochondrion	47.25	54.99
KRH50554	Soybean	cytosol, nucleus	40.44	43.71
KRG89553	Soybean	nucleus	40.44	43.5
KRH59134	Soybean	plastid	45.27	43.37
KRH74933	Soybean	cytosol	40.66	43.33
KRH43026	Soybean	nucleus	44.62	42.74
KRH18929	Soybean	cytosol	6.15	41.79

Protein Annotations

Gene3D:1.10.510.10	Gene3D:1.25.40.20	EntrezGene:100806334	MapMan:18.4.1.30	Gene3D:3.30.200.20	EMBL:ACUP02008341
InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	EnsemblPlantsGene:GLYMA_13G223400	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0004871	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006464	GO:GO:0006468
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301
GO:GO:0016740	GO:GO:0019538	GO:GO:0035556	UniProt:I1M1M4	InterPro:IPR000719	InterPro:IPR002110
InterPro:IPR020683	InterPro:IPR036770	EnsemblPlants:KRH21151	ProteinID:KRH21151	ProteinID:KRH21151.1	InterPro:Kinase-like_dom_sf
PFAM:PF07714	PFAM:PF12796	PIRSF:PIRSF000654	PRINTS:PR00109	PFscan:PS50011	PFscan:PS50088
PFscan:PS50297	PANTHER:PTHR44023	PANTHER:PTHR44023:SF7	InterPro:Prot_kinase_dom	SMART:SM00248	SUPFAM:SSF48403
SUPFAM:SSF56112	InterPro:Ser-Thr/Tyr_kinase_cat_dom	UniParc:UPI000233AAF9	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr13:-:33643853..33651808

Molecular Weight (calculated)

51452.5 Da

IEP (calculated)

7.600

GRAVY (calculated)

-0.460

Length

455 amino acids

Sequence
(BLAST)

001: MESKNPARFT LGKQSSLAPE RHNKEAELQN DGEVVDQGVR LMYSAFEGDV DGICEALEFG VSVNYKDIDN RTALHVAVCE GFTDVVDLLL QKGAEVDPKD
101: RWGSTPLADA IFYKKNDVIK LLEKHGAKLL MAPMHVNHAR EVPEYEINPK ELDFTNSVEI TKGTFCIALW RGTEVAVKKL GEDVISDEEK VKAFRDELAL
201: FQKIRHPNVV QFLGAVTQSS PMMIVTEYLP KGDLRDFLKR KGALKPSTAV RFALDIARGV GYLHENKPSP IIHRDLEPSN ILRDDSGHLK VADFGVSKLL
301: AVKEDKPLTC HDTSCRYVAP EVFRQEYDTK VDVFSFALIL QEMIEGCPPF SAKQDNEVPK VYAAKERPPF RAPAKHYSYG IRELIEECWN ENPAKRPTFR
401: QIITRLESIY NTISHKRHWK VRPLKCFQNL EALLKRDHSN GSSRGGSSRS TSSRI

Best Arabidopsis Sequence Match ( AT4G18950.1 )
(BLAST)

001: MEEDYQQPRF TIGRQSSMAP EKIPEPSVHS EEEVFEDGEE IDGGVRLMYL ANEGDIEGIK ELIDSGIDAN YRDIDDRTAL HVAACQGLKD VVELLLDRKA
101: EVDPKDRWGS TPFADAIFYK NIDVIKILEI HGAKHPMAPM HVKTAREVPE YEINPSELDF TQSKEITKGT YCMAMWRGIQ VAVKKLDDEV LSDDDQVRKF
201: HDELALLQRL RHPNIVQFLG AVTQSNPMMI VTEYLPRGDL RELLKRKGQL KPATAVRYAL DIARGMSYLH EIKGDPIIHR DLEPSNILRD DSGHLKVADF
301: GVSKLVTVKE DKPFTCQDIS CRYIAPEVFT SEEYDTKADV FSFALIVQEM IEGRMPFAEK EDSEASEAYA GKHRPLFKAP SKNYPHGLKT LIEECWHEKP
401: AKRPTFREII KRLESILHHM GHKRQWRMRP LTCFQNFEHK KKHNWDLSSH DGSSSGSHL

Arabidopsis Description

At4g18950/F13C5_120 [Source:UniProtKB/TrEMBL;Acc:Q93Z30]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.