CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 3
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH42483
KRH58580

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G14000.1	KRH42483	AT2G01950.1	19000166
AT1G14000.1	KRH58580	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH50554	Soybean	cytosol, nucleus	97.87	98.34
KRH74933	Soybean	cytosol	87.47	86.65
VIT_01s0182g00020.t01	Wine grape	cytosol	85.58	83.22
PGSC0003DMT400072865	Potato	cytosol	83.45	81.15
CDX98142	Canola	cytosol	83.22	81.11
CDY36424	Canola	cytosol	83.22	81.11
CDY16124	Canola	cytosol	83.69	80.82
CDY33786	Canola	cytosol	83.69	80.82
Solyc05g013070.2.1	Tomato	cytosol	83.22	80.73
AT1G14000.1	Thale cress	cytosol	82.98	80.14
Solyc01g010950.2.1	Tomato	extracellular	79.91	78.6
Os07t0632800-01	Rice	plasma membrane	73.29	77.89
Bra026867.1-P	Field mustard	cytosol	83.45	77.58
GSMUA_Achr8P16850_001	Banana	cytosol	60.52	76.19
GSMUA_Achr6P10820_001	Banana	cytosol	78.96	72.77
EER99756	Sorghum	cytosol	74.23	71.04
TraesCS2A01G155500.1	Wheat	cytosol	74.23	70.88
Zm00001d022239_P001	Maize	cytosol, extracellular	73.05	70.23
TraesCS2D01G161300.1	Wheat	cytosol	74.7	69.91
TraesCS2B01G180500.1	Wheat	cytosol	74.47	69.69
HORVU2Hr1G028230.14	Barley	cytosol	74.47	69.38
Bra019692.1-P	Field mustard	nucleus	79.67	61.27
KRH73700	Soybean	cytosol	43.5	40.53
KRH21151	Soybean	nucleus	43.5	40.44
KRH11091	Soybean	nucleus	43.03	39.91
KRH14455	Soybean	cytosol, mitochondrion	42.32	39.51
KRH18929	Soybean	cytosol	5.2	32.84
KRH43026	Soybean	nucleus	36.64	32.63
KRH59134	Soybean	plastid	35.7	31.79

Protein Annotations

Gene3D:1.10.510.10	Gene3D:1.25.40.20	EntrezGene:100793237	MapMan:18.4.1.30	Gene3D:3.30.200.20	UniProt:A0A0R4J632
EMBL:ACUP02012216	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	EnsemblPlantsGene:GLYMA_20G031300	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719	InterPro:IPR002110	InterPro:IPR020683
InterPro:IPR036770	EnsemblPlants:KRG89553	ProteinID:KRG89553	ProteinID:KRG89553.1	InterPro:Kinase-like_dom_sf	PFAM:PF07714
PFAM:PF12796	PIRSF:PIRSF000654	PRINTS:PR00109	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011
PFscan:PS50088	PFscan:PS50297	PANTHER:PTHR44023	PANTHER:PTHR44023:SF6	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS
SMART:SM00220	SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF56112	InterPro:Ser-Thr/Tyr_kinase_cat_dom	InterPro:Ser/Thr_kinase_AS
UniParc:UPI00018C6EC5	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:+:3839747..3847498

Molecular Weight (calculated)

47999.2 Da

IEP (calculated)

7.890

GRAVY (calculated)

-0.503

Length

423 amino acids

Sequence
(BLAST)

001: MSSGSSSSHS SEKEKEKQRV SRTSLILWHA HQNDAAAVRK LLQEDPSLVK ARDYDNRTPL HVASLHGWID VATCLIEFGA DVNAQDRWKN TPLADAEGAK
101: KSNVIELLQS HGGLSFGQNG SHFEPKPVAP PLPNKCDWEV EPTELDFSNS VRIGKGSFGE ILKAHWRGTP VAVKRILPSL SEDRLVIQDF RHEVNLLVKL
201: RHPNIVQFLG AVTDRKPLML ITEYLRGGDL HQYLKEKGAL SPATAISFSM DIVRGMAYLH NEPNVIIHRD LKPRNVLLVN SSADHLKVGD FGLSKLITVQ
301: SSHDVYKMTG ETGSYRYMAP EVFKHRRYDK KVDVYSFAMI LYEMLEGEPP FASREPYEGA KYAAEGHRPH FRAKGYTPEL QELTEQCWAH DMSQRPSFIE
401: ILKRLEKIKE NLPTEHHWHL FTS

Best Arabidopsis Sequence Match ( AT1G14000.1 )
(BLAST)

001: MSSDSPAAGD GGEQAAAGTS VPSPSYDKQK EKARVSRTSL ILWHAHQNDA AAVRKLLEED PTLVHARDYD KRTPLHVASL HGWIDVVKCL LEFGADVNAQ
101: DRWKNTPLAD AEGARKQKMI ELLKSHGGLS YGQNGSHFEP KPVPPPIPKK CDWEIEPAEL DFSNAAMIGK GSFGEIVKAY WRGTPVAVKR ILPSLSDDRL
201: VIQDFRHEVD LLVKLRHPNI VQFLGAVTER KPLMLITEYL RGGDLHQYLK EKGGLTPTTA VNFALDIARG MTYLHNEPNV IIHRDLKPRN VLLVNSSADH
301: LKVGDFGLSK LIKVQNSHDV YKMTGETGSY RYMAPEVFKH RRYDKKVDVF SFAMILYEML EGEPPFANHE PYEAAKHVSD GHRPTFRSKG CTPDLRELIV
401: KCWDADMNQR PSFLDILKRL EKIKETLPSD HHWGLFTS

Arabidopsis Description

VIKVIK [Source:UniProtKB/TrEMBL;Acc:A0A178W4T8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.