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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 4
  • nucleus 1
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:cytosol
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
OQU92006

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G14000.1 OQU92006 AT2G01950.1 19000166
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d022239_P001 Maize cytosol, extracellular 95.93 96.36
Os07t0632800-01 Rice plasma membrane 82.81 91.96
TraesCS2A01G155500.1 Wheat cytosol 84.84 84.65
TraesCS2B01G180500.1 Wheat cytosol 85.97 84.07
TraesCS2D01G161300.1 Wheat cytosol 85.75 83.85
HORVU2Hr1G028230.14 Barley cytosol 85.52 83.26
Solyc01g010950.2.1 Tomato extracellular 73.3 75.35
VIT_01s0182g00020.t01 Wine grape cytosol 73.76 74.94
Solyc05g013070.2.1 Tomato cytosol 73.76 74.77
PGSC0003DMT400072865 Potato cytosol 73.3 74.48
KRH50554 Soybean cytosol, nucleus 70.81 74.35
KRG89553 Soybean nucleus 71.04 74.23
KRH74933 Soybean cytosol 71.04 73.54
CDY16124 Canola cytosol 72.4 73.06
CDY36424 Canola cytosol 71.72 73.04
CDY33786 Canola cytosol 72.17 72.83
CDX98142 Canola cytosol 71.49 72.81
AT1G14000.1 Thale cress cytosol 71.49 72.15
Bra026867.1-P Field mustard cytosol 71.72 69.67
GSMUA_Achr8P16840_001 Banana cytosol 21.27 67.63
Bra019692.1-P Field mustard nucleus 69.0 55.45
EES03608 Sorghum cytosol 37.1 34.67
KXG30604 Sorghum mitochondrion 34.39 31.08
KXG33869 Sorghum mitochondrion 31.9 29.5
Protein Annotations
Gene3D:1.10.510.10Gene3D:1.25.40.20MapMan:18.4.1.30Gene3D:3.30.200.20EntrezGene:8079372InterPro:Ankyrin_rpt
InterPro:Ankyrin_rpt-contain_domInterPro:Ankyrin_rpt-contain_sfUniProt:C5X381EnsemblPlants:EER99756ProteinID:EER99756ProteinID:EER99756.1
GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0004672GO:GO:0004674GO:GO:0004871
GO:GO:0005488GO:GO:0005515GO:GO:0005524GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0006464GO:GO:0006468GO:GO:0007154GO:GO:0007165GO:GO:0007275
GO:GO:0008150GO:GO:0008152GO:GO:0009719GO:GO:0009734GO:GO:0009742GO:GO:0009987
GO:GO:0010305GO:GO:0016301GO:GO:0016740GO:GO:0019538GO:GO:0035556InterPro:IPR000719
InterPro:IPR002110InterPro:IPR020683InterPro:IPR036770InterPro:Kinase-like_dom_sfPFAM:PF07714PFAM:PF12796
PIRSF:PIRSF000654ScanProsite:PS00107ScanProsite:PS00108PFscan:PS50011PFscan:PS50088PFscan:PS50297
PANTHER:PTHR44023PANTHER:PTHR44023:SF6InterPro:Prot_kinase_domInterPro:Protein_kinase_ATP_BSSMART:SM00220SMART:SM00248
EnsemblPlantsGene:SORBI_3002G386800SUPFAM:SSF48403SUPFAM:SSF56112unigene:Sbi.3944InterPro:Ser-Thr/Tyr_kinase_cat_domInterPro:Ser/Thr_kinase_AS
UniParc:UPI0001A83F9DRefSeq:XP_002463235.1SEG:seg:::
Description
hypothetical protein
Coordinates
chr2:-:74102304..74106835
Molecular Weight (calculated)
49381.9 Da
IEP (calculated)
7.117
GRAVY (calculated)
-0.383
Length
442 amino acids
Sequence
(BLAST)
001: MSASEEDAAP AAADGGSGGG SSGAGSSEGG ARRRFDDKGL VARTSLILWH THQNDVGAVR KLLEEDAALV NARDYDSRTP LHVAALHGWH DVAECLIANG
101: ADVNAQDRWQ NTPLADAEGA KRQSMIELLK EHGGLTYGKT GSHFEPKTIP PPLTNKADWE INPLELDFTK ALVIGKGSFG EILKANWRGT PIAVKRILPS
201: LSDDRLVIQD FKHEVNLLIK LRHPNIVQFL GAVTETKPLM LITEFLRGGD LHQYLKEKGA LNPLTAVSFA LDIARGMAYL HNEPNVVIHR DLKPRNILLV
301: NSAANHLKVG DFGLSKIIRA QHANDVYKMT GETGSYRYMA PEVFKHRKYD KKVDIFSFAM ILYEMMEGDP PFSSYEPYEA AKYVADGHRP IFRKSHTNEL
401: KDLVELCWSG DISLRPSFLE ILKRLEKLKE HYSHENHWHL FQ
Best Arabidopsis Sequence Match ( AT1G14000.1 )
(BLAST)
001: MSSDSPAAGD GGEQAAAGTS VPSPSYDKQK EKARVSRTSL ILWHAHQNDA AAVRKLLEED PTLVHARDYD KRTPLHVASL HGWIDVVKCL LEFGADVNAQ
101: DRWKNTPLAD AEGARKQKMI ELLKSHGGLS YGQNGSHFEP KPVPPPIPKK CDWEIEPAEL DFSNAAMIGK GSFGEIVKAY WRGTPVAVKR ILPSLSDDRL
201: VIQDFRHEVD LLVKLRHPNI VQFLGAVTER KPLMLITEYL RGGDLHQYLK EKGGLTPTTA VNFALDIARG MTYLHNEPNV IIHRDLKPRN VLLVNSSADH
301: LKVGDFGLSK LIKVQNSHDV YKMTGETGSY RYMAPEVFKH RRYDKKVDVF SFAMILYEML EGEPPFANHE PYEAAKHVSD GHRPTFRSKG CTPDLRELIV
401: KCWDADMNQR PSFLDILKRL EKIKETLPSD HHWGLFTS
Arabidopsis Description
VIKVIK [Source:UniProtKB/TrEMBL;Acc:A0A178W4T8]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.