Factsheet for VIT_01s0182g00020.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g06410.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G14000.1	VIT_01s0011g06410.t01	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG89553	Soybean	nucleus	83.22	85.58
PGSC0003DMT400072865	Potato	cytosol	85.29	85.29
Solyc05g013070.2.1	Tomato	cytosol	85.06	84.86
KRH74933	Soybean	cytosol	83.22	84.78
Solyc01g010950.2.1	Tomato	extracellular	83.68	84.65
KRH50554	Soybean	cytosol, nucleus	81.61	84.32
CDX98142	Canola	cytosol	83.22	83.41
CDY36424	Canola	cytosol	83.22	83.41
CDY16124	Canola	cytosol	82.99	82.42
CDY33786	Canola	cytosol	82.99	82.42
AT1G14000.1	Thale cress	cytosol	82.53	81.96
Os07t0632800-01	Rice	plasma membrane	74.48	81.41
GSMUA_Achr8P16850_001	Banana	cytosol	61.38	79.46
Bra026867.1-P	Field mustard	cytosol	82.3	78.68
GSMUA_Achr6P10820_001	Banana	cytosol	82.3	78.0
TraesCS2A01G155500.1	Wheat	cytosol	76.09	74.72
TraesCS2D01G161300.1	Wheat	cytosol	76.78	73.89
EER99756	Sorghum	cytosol	74.94	73.76
TraesCS2B01G180500.1	Wheat	cytosol	76.55	73.67
Zm00001d022239_P001	Maize	cytosol, extracellular	74.48	73.64
HORVU2Hr1G028230.14	Barley	cytosol	76.09	72.91
Bra019692.1-P	Field mustard	nucleus	80.0	63.27
VIT_14s0006g02090.t01	Wine grape	cytosol	11.03	42.86
VIT_10s0003g02060.t01	Wine grape	cytosol	42.99	40.48
VIT_15s0046g02840.t01	Wine grape	cytosol	26.9	38.49
VIT_05s0094g01080.t01	Wine grape	plastid	37.01	34.11
VIT_15s0046g02850.t01	Wine grape	cytosol	35.4	28.52

Protein Annotations

Gene3D:1.10.510.10	Gene3D:1.25.40.20	EntrezGene:100242045	wikigene:100242045	MapMan:18.4.1.30	Gene3D:3.30.200.20
InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	ProteinID:CBI35046	ProteinID:CBI35046.3	UniProt:D7TX21
EMBL:FN596253	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004674
GO:GO:0004871	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0006468	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009719	GO:GO:0009734	GO:GO:0009742	GO:GO:0009987
GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	GO:GO:0035556	InterPro:IPR000719	InterPro:IPR002110
InterPro:IPR020683	InterPro:IPR036770	InterPro:Kinase-like_dom_sf	EntrezGene:LOC100242045	wikigene:LOC100242045	PFAM:PF07714
PFAM:PF12796	PIRSF:PIRSF000654	PRINTS:PR00109	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011
PFscan:PS50088	PFscan:PS50297	PANTHER:PTHR44023	PANTHER:PTHR44023:SF6	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS
SMART:SM00220	SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF56112	InterPro:Ser-Thr/Tyr_kinase_cat_dom	InterPro:Ser/Thr_kinase_AS
TIGR:TC53721	TIGR:TC69102	UniParc:UPI00015CD514	ArrayExpress:VIT_01s0182g00020	EnsemblPlantsGene:VIT_01s0182g00020	EnsemblPlants:VIT_01s0182g00020.t01
unigene:Vvi.6708	RefSeq:XP_002266329	RefSeq:XP_002266329.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr1:+:13949463..13973640

Molecular Weight (calculated)

49128.8 Da

IEP (calculated)

8.002

GRAVY (calculated)

-0.470

Length

435 amino acids

Sequence
(BLAST)

001: MSCRDDNSGG HSSTSAAGKD KASDKQKEKA RVSRTSLILW HAHQNDAAAV RKLLEEDQSL VHARDYDSRT PLHVASLHGW IDVAKCLIEF GADVNAQDRW
101: KNTPLADAEG AKKHSMIELL KSYGGLSYGQ NGSHFEPKPV PPPLPNKCDW EIDPSELDFS NSSIIGKGSF GEILKACWRG TPVAVKRILP SLSDDRLVIQ
201: DFRHEVNLLV KLRHPNIVQF LGAVTDKKPL MLITEYLRGG DLHQYLKEKG SLSPSTAITF AMDIARGMAY LHNEPNVIIH RDLKPRNVLL VNTGADHLKV
301: GDFGLSKLIK VQNSHDVYKM TGETGSYRYM APEVFKHRKY DKKVDVFSFA MILYEMLEGD PPLSNYEPYE AAKYVAEGQR PMFRAKGYIT ELKELTEQCW
401: AADMNHRPSF LEILKRLEKI KEILPPDHHW NIFTA

Best Arabidopsis Sequence Match ( AT1G14000.1 )
(BLAST)

001: MSSDSPAAGD GGEQAAAGTS VPSPSYDKQK EKARVSRTSL ILWHAHQNDA AAVRKLLEED PTLVHARDYD KRTPLHVASL HGWIDVVKCL LEFGADVNAQ
101: DRWKNTPLAD AEGARKQKMI ELLKSHGGLS YGQNGSHFEP KPVPPPIPKK CDWEIEPAEL DFSNAAMIGK GSFGEIVKAY WRGTPVAVKR ILPSLSDDRL
201: VIQDFRHEVD LLVKLRHPNI VQFLGAVTER KPLMLITEYL RGGDLHQYLK EKGGLTPTTA VNFALDIARG MTYLHNEPNV IIHRDLKPRN VLLVNSSADH
301: LKVGDFGLSK LIKVQNSHDV YKMTGETGSY RYMAPEVFKH RRYDKKVDVF SFAMILYEML EGEPPFANHE PYEAAKHVSD GHRPTFRSKG CTPDLRELIV
401: KCWDADMNQR PSFLDILKRL EKIKETLPSD HHWGLFTS

Arabidopsis Description

VIKVIK [Source:UniProtKB/TrEMBL;Acc:A0A178W4T8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.