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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • cytosol 4
  • nucleus 1
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:cytosol
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:cytosol
YLoc:cytosol
 extracellular: 29876421
msms PMID: 29876421 doi
L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc04g008430.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G14000.1 Solyc04g008430.1.1 AT2G01950.1 19000166
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc05g013070.2.1 Tomato cytosol 87.44 86.24
VIT_01s0182g00020.t01 Wine grape cytosol 84.65 83.68
CDY36424 Canola cytosol 81.4 80.65
KRH50554 Soybean cytosol, nucleus 78.84 80.52
CDX98142 Canola cytosol 80.93 80.18
KRG89553 Soybean nucleus 78.6 79.91
Os07t0632800-01 Rice plasma membrane 73.49 79.4
KRH74933 Soybean cytosol 78.84 79.39
AT1G14000.1 Thale cress cytosol 80.7 79.22
CDY33786 Canola cytosol 80.7 79.22
CDY16124 Canola cytosol 80.47 79.0
GSMUA_Achr8P16850_001 Banana cytosol 59.3 75.89
Bra026867.1-P Field mustard cytosol 80.0 75.6
GSMUA_Achr6P10820_001 Banana cytosol 79.77 74.73
Zm00001d022239_P001 Maize cytosol, extracellular 75.35 73.64
EER99756 Sorghum cytosol 75.35 73.3
TraesCS2A01G155500.1 Wheat cytosol 74.88 72.69
TraesCS2D01G161300.1 Wheat cytosol 75.12 71.46
TraesCS2B01G180500.1 Wheat cytosol 74.65 71.02
HORVU2Hr1G028230.14 Barley cytosol 74.42 70.48
Bra019692.1-P Field mustard nucleus 77.91 60.91
Solyc07g055870.2.1 Tomato cytosol 41.86 39.22
Solyc10g017490.1.1 Tomato cytosol 39.3 38.5
Solyc02g071740.2.1 Tomato cytosol 41.16 38.39
Solyc03g005920.2.1 Tomato cytosol 41.16 38.31
Solyc08g014450.2.1 Tomato mitochondrion 36.05 32.84
Solyc12g019410.1.1 Tomato plastid 35.81 32.84
Solyc02g091160.2.1 Tomato cytosol 9.77 25.77
Solyc02g091170.2.1 Tomato cytosol 16.51 24.91
Protein Annotations
Gene3D:1.10.510.10Gene3D:1.25.40.20MapMan:18.4.1.30Gene3D:3.30.200.20InterPro:Ankyrin_rptInterPro:Ankyrin_rpt-contain_dom
InterPro:Ankyrin_rpt-contain_sfGO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0004672GO:GO:0004674
GO:GO:0004871GO:GO:0005488GO:GO:0005515GO:GO:0005524GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0006464GO:GO:0006468GO:GO:0007154GO:GO:0007165
GO:GO:0008150GO:GO:0008152GO:GO:0009719GO:GO:0009734GO:GO:0009742GO:GO:0009987
GO:GO:0016301GO:GO:0016740GO:GO:0019538GO:GO:0035556InterPro:IPR000719InterPro:IPR002110
InterPro:IPR020683InterPro:IPR036770UniProt:K4ATT8InterPro:Kinase-like_dom_sfPFAM:PF07714PFAM:PF12796
PIRSF:PIRSF000654PRINTS:PR00109ScanProsite:PS00107ScanProsite:PS00108PFscan:PS50011PFscan:PS50088
PFscan:PS50297PANTHER:PTHR44023PANTHER:PTHR44023:SF6InterPro:Prot_kinase_domInterPro:Protein_kinase_ATP_BSSMART:SM00220
SMART:SM00248SUPFAM:SSF48403SUPFAM:SSF56112InterPro:Ser-Thr/Tyr_kinase_cat_domInterPro:Ser/Thr_kinase_ASEnsemblPlantsGene:Solyc01g010950.2
EnsemblPlants:Solyc01g010950.2.1UniParc:UPI0002761ED9SEG:seg:::
Description
No Description!
Coordinates
chr1:-:6505612..6517771
Molecular Weight (calculated)
48443.1 Da
IEP (calculated)
8.928
GRAVY (calculated)
-0.472
Length
430 amino acids
Sequence
(BLAST)
001: MSGSEGSSGG GEPATSSTEK KKKEKARVSR TSLILWKTHQ NDKSAVRKLL EEDPTLVQAR DYDNRTPLHV AALHGWIDIA KCLIEYGADV NSQDRWRNTP
101: LADAEGAKKH GMIELLKSYG GLSYGQDGSH FEPKAVPPPL PKKCDWEIDP TELDFSNSAI IGKGSFGEII KACWRGTPVA VKRILPNLSD DQLVIQDFRH
201: EVNLLVKLRH PNVVQFLGAV TEKKPLMLIT EYLRGGDLHQ YLKGKGALSP STAVNFALDI ARGLAYLHNE PNVVIHRDLK PRNVLLVNSS ADHLKVGDFG
301: LSKLIRVQNS HDVYKMTGET GSYRYMAPEV FKHRKYDKKV DVFSFAMIFY EMLEGDPPLS HYEPYEAAKY VADGHRPMFR AKGWTPELKE LVEQCWAKDV
401: NKRPSFLEIL KTLEKIKLGL PSDNHWNIFT
Best Arabidopsis Sequence Match ( AT1G14000.1 )
(BLAST)
001: MSSDSPAAGD GGEQAAAGTS VPSPSYDKQK EKARVSRTSL ILWHAHQNDA AAVRKLLEED PTLVHARDYD KRTPLHVASL HGWIDVVKCL LEFGADVNAQ
101: DRWKNTPLAD AEGARKQKMI ELLKSHGGLS YGQNGSHFEP KPVPPPIPKK CDWEIEPAEL DFSNAAMIGK GSFGEIVKAY WRGTPVAVKR ILPSLSDDRL
201: VIQDFRHEVD LLVKLRHPNI VQFLGAVTER KPLMLITEYL RGGDLHQYLK EKGGLTPTTA VNFALDIARG MTYLHNEPNV IIHRDLKPRN VLLVNSSADH
301: LKVGDFGLSK LIKVQNSHDV YKMTGETGSY RYMAPEVFKH RRYDKKVDVF SFAMILYEML EGEPPFANHE PYEAAKHVSD GHRPTFRSKG CTPDLRELIV
401: KCWDADMNQR PSFLDILKRL EKIKETLPSD HHWGLFTS
Arabidopsis Description
VIKVIK [Source:UniProtKB/TrEMBL;Acc:A0A178W4T8]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.