Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- cytosol 3
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400078613 | Potato | cytosol | 91.41 | 34.65 |
| Solyc10g017490.1.1 | Tomato | cytosol | 33.74 | 12.53 |
| Solyc07g055870.2.1 | Tomato | cytosol | 31.9 | 11.33 |
| Solyc12g019410.1.1 | Tomato | plastid | 31.29 | 10.87 |
| Solyc03g005920.2.1 | Tomato | cytosol | 30.67 | 10.82 |
| Solyc08g014450.2.1 | Tomato | mitochondrion | 30.67 | 10.59 |
| Solyc02g071740.2.1 | Tomato | cytosol | 28.22 | 9.98 |
| Solyc01g010950.2.1 | Tomato | extracellular | 25.77 | 9.77 |
| Solyc05g013070.2.1 | Tomato | cytosol | 25.77 | 9.63 |
| VIT_14s0006g02090.t01 | Wine grape | cytosol | 5.52 | 8.04 |
| Solyc02g091170.2.1 | Tomato | cytosol | 7.36 | 4.21 |
Protein Annotations
| EnsemblPlants:Solyc02g091160.2.1 | EnsemblPlantsGene:Solyc02g091160.2 | Gene3D:1.25.40.20 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:Ankyrin_rpt | InterPro:Ankyrin_rpt-contain_dom | InterPro:Ankyrin_rpt-contain_sf | InterPro:IPR002110 | InterPro:IPR020683 | InterPro:IPR036770 |
| ncoils:Coil | PANTHER:PTHR44023 | PANTHER:PTHR44023:SF2 | PFAM:PF13857 | PFscan:PS50088 | PFscan:PS50297 |
| SMART:SM00248 | SUPFAM:SSF48403 | UniParc:UPI00027677CA | UniProt:K4BCR5 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr2:+:52558786..52560822
Molecular Weight (calculated)
18453.1 Da
IEP (calculated)
6.939
GRAVY (calculated)
-0.344
Length
163 amino acids
Sequence
(BLAST)
(BLAST)
001: MEISTILMRH KDSSCGHFDM QMIGTFLSFA SRGDRVGLNQ MLRRGISPNV QDYDKRTALH LAASEGHASI VELLLAYKAD VNLKDRWRRT PLTDAKLYGH
101: RDICRILEVC GGKDSNSDHP LTVRHEEDSV EVNIDISELN LQHSSIIEQV LIWKSKGCGM SWC
101: RDICRILEVC GGKDSNSDHP LTVRHEEDSV EVNIDISELN LQHSSIIEQV LIWKSKGCGM SWC
001: MEEDYQQPRF TIGRQSSMAP EKIPEPSVHS EEEVFEDGEE IDGGVRLMYL ANEGDIEGIK ELIDSGIDAN YRDIDDRTAL HVAACQGLKD VVELLLDRKA
101: EVDPKDRWGS TPFADAIFYK NIDVIKILEI HGAKHPMAPM HVKTAREVPE YEINPSELDF TQSKEITKGT YCMAMWRGIQ VAVKKLDDEV LSDDDQVRKF
201: HDELALLQRL RHPNIVQFLG AVTQSNPMMI VTEYLPRGDL RELLKRKGQL KPATAVRYAL DIARGMSYLH EIKGDPIIHR DLEPSNILRD DSGHLKVADF
301: GVSKLVTVKE DKPFTCQDIS CRYIAPEVFT SEEYDTKADV FSFALIVQEM IEGRMPFAEK EDSEASEAYA GKHRPLFKAP SKNYPHGLKT LIEECWHEKP
401: AKRPTFREII KRLESILHHM GHKRQWRVCF SISLSNTH
101: EVDPKDRWGS TPFADAIFYK NIDVIKILEI HGAKHPMAPM HVKTAREVPE YEINPSELDF TQSKEITKGT YCMAMWRGIQ VAVKKLDDEV LSDDDQVRKF
201: HDELALLQRL RHPNIVQFLG AVTQSNPMMI VTEYLPRGDL RELLKRKGQL KPATAVRYAL DIARGMSYLH EIKGDPIIHR DLEPSNILRD DSGHLKVADF
301: GVSKLVTVKE DKPFTCQDIS CRYIAPEVFT SEEYDTKADV FSFALIVQEM IEGRMPFAEK EDSEASEAYA GKHRPLFKAP SKNYPHGLKT LIEECWHEKP
401: AKRPTFREII KRLESILHHM GHKRQWRVCF SISLSNTH
Arabidopsis Description
At4g18950/F13C5_120 [Source:UniProtKB/TrEMBL;Acc:Q93Z30]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.