CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytoskeleton, cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY03088
CDY17621

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G14000.1	CDY03088	AT2G01950.1	19000166
AT1G14000.1	CDY17621	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY36424	Canola	cytosol	99.31	99.31
CDY33786	Canola	cytosol	96.77	95.89
CDY16124	Canola	cytosol	96.31	95.43
AT1G14000.1	Thale cress	cytosol	96.31	95.43
VIT_01s0182g00020.t01	Wine grape	cytosol	83.41	83.22
KRG89553	Soybean	nucleus	81.11	83.22
KRH50554	Soybean	cytosol, nucleus	80.65	83.14
KRH74933	Soybean	cytosol	81.11	82.44
Solyc05g013070.2.1	Tomato	cytosol	82.26	81.88
PGSC0003DMT400072865	Potato	cytosol	81.8	81.61
Solyc01g010950.2.1	Tomato	extracellular	80.18	80.93
Os07t0632800-01	Rice	plasma membrane	73.5	80.15
GSMUA_Achr8P16850_001	Banana	cytosol	61.06	78.87
GSMUA_Achr6P10820_001	Banana	cytosol	79.72	75.38
Bra019692.1-P	Field mustard	nucleus	95.16	75.09
TraesCS2A01G155500.1	Wheat	cytosol	74.88	73.36
TraesCS2D01G161300.1	Wheat	cytosol	75.35	72.35
TraesCS2B01G180500.1	Wheat	cytosol	75.12	72.12
Zm00001d022239_P001	Maize	cytosol, extracellular	73.04	72.05
EER99756	Sorghum	cytosol	72.81	71.49
HORVU2Hr1G028230.14	Barley	cytosol	74.19	70.93
CDY15369	Canola	cytosol	26.73	39.46
CDX71924	Canola	mitochondrion	41.94	39.06
CDY00588	Canola	mitochondrion	41.94	38.89
CDX89004	Canola	mitochondrion	41.71	38.68
CDX76504	Canola	cytosol	39.86	37.69
CDX99407	Canola	cytosol	39.63	37.47
CDY19105	Canola	cytosol	14.98	37.36
CDX78907	Canola	cytosol	39.4	37.25
CDY05975	Canola	nucleus, plastid	37.1	33.61
CDX67815	Canola	plastid	36.64	33.4
CDX71872	Canola	cytosol, plastid	36.87	33.4
CDX98397	Canola	plastid	36.18	32.98
CDY19106	Canola	mitochondrion	21.89	31.56
CDX84758	Canola	mitochondrion	34.56	30.86
CDX79441	Canola	mitochondrion	34.56	30.86
CDY15368	Canola	mitochondrion	8.99	21.55
CDY49253	Canola	cytosol	42.17	16.82
CDX71868	Canola	extracellular	11.75	13.14
CDX71869	Canola	cytosol	1.84	2.45
CDX71871	Canola	cytosol	1.61	1.98

Protein Annotations

Gene3D:1.10.510.10	Gene3D:1.25.40.20	MapMan:18.4.1.30	GO:A0A078EAY4	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom
InterPro:Ankyrin_rpt-contain_sf	EnsemblPlants:CDX98142	ProteinID:CDX98142	ProteinID:CDX98142.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004672	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0006464
GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740
GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00105533001	InterPro:IPR000719	InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770
InterPro:Kinase-like_dom_sf	PFAM:PF07714	PFAM:PF12796	PIRSF:PIRSF000654	PRINTS:PR00109	ScanProsite:PS00107
ScanProsite:PS00108	PFscan:PS50011	PFscan:PS50088	PFscan:PS50297	PANTHER:PTHR44023	PANTHER:PTHR44023:SF6
InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF56112
InterPro:Ser-Thr/Tyr_kinase_cat_dom	InterPro:Ser/Thr_kinase_AS	UniParc:UPI0004EDBEC3	SEG:seg	:	:

Description

BnaA06g08930D

Coordinates

chrLK031902:+:1291197..1293721

Molecular Weight (calculated)

48898.6 Da

IEP (calculated)

8.317

GRAVY (calculated)

-0.458

Length

434 amino acids

Sequence
(BLAST)

001: MSSEASAAGY GGETSGGPAP AYDKQKEKAR VSRTSLILWH AHQNDAAAVR KLLEEDPSLV HARDYDKRTP LHVASLHGWI DVVKCLIEFG ADVNAQDRWK
101: NTPLADAEGA RKQKMIELLK SHGGLSYGQN GSHFEPKPVP PPIPKKCDWE IEPAELDFSN AAMIGKGSFG EIVKAYWRGT PVAVKRILPS LSDDRLVIQD
201: FRHEVDLLVK LRHPNIVQFL GAVTERKPLM LITEYLRGGD LHQYLKEKGG LTPATAVNFA LDIARGMTYL HNEPNVIIHR DLKPRNVLLV NSSADHLKVG
301: DFGLSKLIKV QNSHDVYKMT GETGSYRYMA PEVFKHRKYD KKVDVFSFAM ILYEMLEGEP PFANYEPYEA AKHVSDGHRP TFRSKGCTPD LRELIVKCWD
401: ADMNQRPSFL DILKRLDKIK ETLPSDHHWG LFTS

Best Arabidopsis Sequence Match ( AT1G14000.1 )
(BLAST)

001: MSSDSPAAGD GGEQAAAGTS VPSPSYDKQK EKARVSRTSL ILWHAHQNDA AAVRKLLEED PTLVHARDYD KRTPLHVASL HGWIDVVKCL LEFGADVNAQ
101: DRWKNTPLAD AEGARKQKMI ELLKSHGGLS YGQNGSHFEP KPVPPPIPKK CDWEIEPAEL DFSNAAMIGK GSFGEIVKAY WRGTPVAVKR ILPSLSDDRL
201: VIQDFRHEVD LLVKLRHPNI VQFLGAVTER KPLMLITEYL RGGDLHQYLK EKGGLTPTTA VNFALDIARG MTYLHNEPNV IIHRDLKPRN VLLVNSSADH
301: LKVGDFGLSK LIKVQNSHDV YKMTGETGSY RYMAPEVFKH RRYDKKVDVF SFAMILYEML EGEPPFANHE PYEAAKHVSD GHRPTFRSKG CTPDLRELIV
401: KCWDADMNQR PSFLDILKRL EKIKETLPSD HHWGLFTS

Arabidopsis Description

VIKVIK [Source:UniProtKB/TrEMBL;Acc:A0A178W4T8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.