CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
peroxisome 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	peroxisome
PProwler:	peroxisome
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73678
CDX92401
CDX95314
CDY06478
CDY23174

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G18950.1	CDX73678	AT3G51920.1	17360592
AT4G18950.1	CDX95314	AT3G51920.1	17360592
AT4G18950.1	CDY23174	AT3G51920.1	17360592
AT4G18950.1	CDY06478	AT4G14640.1	17360592
AT4G18950.1	CDX92401	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra020982.1-P	Field mustard	cytoskeleton, cytosol, peroxisome	89.32	99.51
CDX99407	Canola	cytosol	89.11	89.11
AT4G18950.1	Thale cress	cytosol	88.67	88.67
CDX78907	Canola	cytosol	88.67	88.67
KRH21151	Soybean	nucleus	66.45	67.03
KRH11091	Soybean	nucleus	66.45	66.89
VIT_10s0003g02060.t01	Wine grape	cytosol	64.71	64.29
Solyc03g005920.2.1	Tomato	cytosol	64.71	64.29
PGSC0003DMT400073140	Potato	cytosol	64.49	64.21
PGSC0003DMT400035023	Potato	cytosol	64.49	64.07
Solyc02g071740.2.1	Tomato	cytosol	64.27	63.99
GSMUA_Achr6P26030_001	Banana	cytosol	62.31	61.64
GSMUA_Achr2P09520_001	Banana	cytosol	60.57	60.43
GSMUA_Achr7P24910_001	Banana	cytosol	59.26	58.62
CDY00588	Canola	mitochondrion	58.17	57.05
CDX71924	Canola	mitochondrion	57.52	56.65
CDX89004	Canola	mitochondrion	57.52	56.41
Zm00001d043459_P005	Maize	cytosol	50.98	56.25
HORVU3Hr1G071430.7	Barley	cytosol	57.08	55.86
Os01t0748600-02	Rice	cytosol	56.86	55.77
TraesCS3D01G272300.1	Wheat	cytosol	57.3	55.72
TraesCS3A01G272900.1	Wheat	nucleus	56.86	55.65
TraesCS3B01G306500.1	Wheat	nucleus	57.08	55.51
EES03608	Sorghum	cytosol	56.64	54.97
GSMUA_Achr9P00030_001	Banana	cytosol	22.88	52.5
GSMUA_Achr9P00040_001	Banana	mitochondrion	41.39	48.59
CDY19106	Canola	mitochondrion	27.67	42.19
CDY15369	Canola	cytosol	26.58	41.5
CDX67815	Canola	plastid	42.7	41.18
CDX98397	Canola	plastid	42.7	41.18
CDX71872	Canola	cytosol, plastid	42.92	41.13
CDY05975	Canola	nucleus, plastid	42.7	40.92
CDX98142	Canola	cytosol	37.69	39.86
CDY36424	Canola	cytosol	37.69	39.86
CDY33786	Canola	cytosol	37.69	39.5
CDY16124	Canola	cytosol	37.47	39.27
CDX84758	Canola	mitochondrion	40.52	38.27
CDX79441	Canola	mitochondrion	40.52	38.27
CDY19105	Canola	cytosol	13.94	36.78
CDY15368	Canola	mitochondrion	13.51	34.25
CDY49253	Canola	cytosol	57.95	24.45
CDX71868	Canola	extracellular	10.02	11.86
CDX71869	Canola	cytosol	1.74	2.45
CDX71871	Canola	cytosol	1.74	2.27

Protein Annotations

Gene3D:1.10.510.10	Gene3D:1.25.40.20	MapMan:18.4.1.30	GO:A0A078CKE2	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom
InterPro:Ankyrin_rpt-contain_sf	EnsemblPlants:CDX76504	ProteinID:CDX76504	ProteinID:CDX76504.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004672	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0006464
GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740
GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00126926001	InterPro:IPR000719	InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770
InterPro:Kinase-like_dom_sf	PFAM:PF07714	PFAM:PF12796	PIRSF:PIRSF000654	PRINTS:PR00109	PFscan:PS50011
PFscan:PS50088	PFscan:PS50297	PANTHER:PTHR44023	PANTHER:PTHR44023:SF7	InterPro:Prot_kinase_dom	SMART:SM00248
SUPFAM:SSF48403	SUPFAM:SSF56112	InterPro:Ser-Thr/Tyr_kinase_cat_dom	UniParc:UPI0004EEDE15	SEG:seg	:

Description

BnaA08g08960D

Coordinates

chrLK031807:-:1650014..1652949

Molecular Weight (calculated)

52146.3 Da

IEP (calculated)

5.481

GRAVY (calculated)

-0.433

Length

459 amino acids

Sequence
(BLAST)

001: MEVGVLKPSF SIGKLSSLAP EKILEPSVHS EEEVLEDGEE IDGGVRLMYL SNEGDIEGIK ELLDSGIDAN YRDIDDRTAL HVASCQGLKD VVELLLEWEA
101: EVDPKDRWGS TPLADAIFYK NIDVIKILET HGAKHPMAPM HVEAALEVPE YEINPDELDF TQSREISNGT YCMAMWRGIQ VAVKKLDDEV LSDENQVRRF
201: HDELALLQRL RHPNIVQFLG AVTQSNPMMI VTEYLPRGDL RELLKRKGHL KPATAVRYAL DIARGMSYLH EIKGDPIIHR DLEPSNILRD DTGHLKVADF
301: AVSKLVTVKE DKPLTFLDTS CRYIAPEVFT SDEYDTKADV FSFALIVQEM IEGRIPFAEK EDSEASEAYA CKERPSFKAP SKHYPHGLKS LIEECWLDKP
401: AKRPTFRAII KRLESILHHM GHKRQWRIKP LTCFQKFEHK KKHNWDVSSP DGSSSGSHL

Best Arabidopsis Sequence Match ( AT4G18950.1 )
(BLAST)

001: MEEDYQQPRF TIGRQSSMAP EKIPEPSVHS EEEVFEDGEE IDGGVRLMYL ANEGDIEGIK ELIDSGIDAN YRDIDDRTAL HVAACQGLKD VVELLLDRKA
101: EVDPKDRWGS TPFADAIFYK NIDVIKILEI HGAKHPMAPM HVKTAREVPE YEINPSELDF TQSKEITKGT YCMAMWRGIQ VAVKKLDDEV LSDDDQVRKF
201: HDELALLQRL RHPNIVQFLG AVTQSNPMMI VTEYLPRGDL RELLKRKGQL KPATAVRYAL DIARGMSYLH EIKGDPIIHR DLEPSNILRD DSGHLKVADF
301: GVSKLVTVKE DKPFTCQDIS CRYIAPEVFT SEEYDTKADV FSFALIVQEM IEGRMPFAEK EDSEASEAYA GKHRPLFKAP SKNYPHGLKT LIEECWHEKP
401: AKRPTFREII KRLESILHHM GHKRQWRMRP LTCFQNFEHK KKHNWDLSSH DGSSSGSHL

Arabidopsis Description

At4g18950/F13C5_120 [Source:UniProtKB/TrEMBL;Acc:Q93Z30]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.