Factsheet for VIT_10s0003g02060.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_05s0020g04420.t01
VIT_06s0009g01910.t01
VIT_08s0040g00470.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G18950.1	VIT_06s0009g01910.t01	AT2G41090.1	17360592
AT4G18950.1	VIT_08s0040g00470.t01	AT2G41090.1	17360592
AT4G18950.1	VIT_06s0009g01910.t01	AT2G41100.1	17360592
AT4G18950.1	VIT_08s0040g00470.t01	AT2G41100.1	17360592
AT4G18950.1	VIT_05s0020g04420.t01	AT4G14640.1	17360592
AT4G18950.1	VIT_06s0009g01910.t01	AT5G21274.1	17360592
AT4G18950.1	VIT_08s0040g00470.t01	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g071740.2.1	Tomato	cytosol	76.84	77.01
PGSC0003DMT400073140	Potato	cytosol	76.19	76.36
KRH11091	Soybean	nucleus	74.89	75.88
KRH21151	Soybean	nucleus	74.46	75.6
GSMUA_Achr6P26030_001	Banana	cytosol	73.59	73.28
Solyc03g005920.2.1	Tomato	cytosol	73.16	73.16
PGSC0003DMT400035023	Potato	cytosol	73.16	73.16
GSMUA_Achr2P09520_001	Banana	cytosol	69.48	69.78
GSMUA_Achr7P24910_001	Banana	cytosol	68.4	68.1
Bra020982.1-P	Field mustard	cytoskeleton, cytosol, peroxisome	60.61	67.96
AT4G18950.1	Thale cress	cytosol	66.23	66.67
CDX99407	Canola	cytosol	66.23	66.67
Bra013363.1-P	Field mustard	cytosol	66.02	66.45
CDX78907	Canola	cytosol	66.02	66.45
CDX76504	Canola	cytosol	64.29	64.71
Os01t0748600-02	Rice	cytosol	63.42	62.61
EES03608	Sorghum	cytosol	64.07	62.58
Zm00001d043459_P005	Maize	cytosol	55.84	62.02
TraesCS3D01G272300.1	Wheat	cytosol	62.99	61.65
TraesCS3A01G272900.1	Wheat	nucleus	62.55	61.62
HORVU3Hr1G071430.7	Barley	cytosol	62.34	61.41
TraesCS3B01G306500.1	Wheat	nucleus	62.55	61.23
GSMUA_Achr9P00030_001	Banana	cytosol	25.76	59.5
GSMUA_Achr9P00040_001	Banana	mitochondrion	47.19	55.75
VIT_05s0094g01080.t01	Wine grape	plastid	45.89	44.92
VIT_01s0182g00020.t01	Wine grape	cytosol	40.48	42.99
VIT_15s0046g02840.t01	Wine grape	cytosol	24.46	37.17
VIT_14s0006g02090.t01	Wine grape	cytosol	8.87	36.61
VIT_15s0046g02850.t01	Wine grape	cytosol	33.12	28.33

Protein Annotations

Gene3D:1.10.510.10	Gene3D:1.25.40.20	EntrezGene:100256688	wikigene:100256688	MapMan:18.4.1.30	Gene3D:3.30.200.20
InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	ProteinID:CBI30758	ProteinID:CBI30758.3	UniProt:D7TJT6
EMBL:FN595992	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004674
GO:GO:0004871	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006464	GO:GO:0006468	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	GO:GO:0035556
InterPro:IPR000719	InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770	InterPro:Kinase-like_dom_sf	EntrezGene:LOC100256688
wikigene:LOC100256688	PFAM:PF07714	PFAM:PF12796	PIRSF:PIRSF000654	PFscan:PS50011	PFscan:PS50088
PFscan:PS50297	PANTHER:PTHR44023	PANTHER:PTHR44023:SF7	InterPro:Prot_kinase_dom	SMART:SM00248	SUPFAM:SSF48403
SUPFAM:SSF56112	InterPro:Ser-Thr/Tyr_kinase_cat_dom	TIGR:TC60342	UniParc:UPI0001983FAF	ArrayExpress:VIT_10s0003g02060	EnsemblPlantsGene:VIT_10s0003g02060
EnsemblPlants:VIT_10s0003g02060.t01	unigene:Vvi.5609	RefSeq:XP_002263226	RefSeq:XP_002263226.1	SEG:seg	:

Description

No Description!

Coordinates

chr10:+:3697834..3713475

Molecular Weight (calculated)

52513.8 Da

IEP (calculated)

6.798

GRAVY (calculated)

-0.479

Length

462 amino acids

Sequence
(BLAST)

001: MAVESKTAVR FTLGKQSSLA PERARDEALT EGEQGDVEGI DPRVRLMYLA NEGDLEGLRE LLDSGMDVNF RDIDNRTALH VAACQGFSDV VEFLLKNGAE
101: IDLEDRWGST PLADAIHYKN HDVIKLLEKH GAQHLMAPMH VNNAREVPEY EIDPKELDFT NSVDITKGTY RIASWRGIQV AVKRLGDEVI IDEDKVKAFR
201: DELALLQKIR HPNVVQFLGA VTQSSPMMIV TEYLPKGDLH AFLKRKGALK TATAVKFALD IARGMNYLHE HRPEAIIHRD LEPSNILRDD SGHLKVADFG
301: VSKLLKVANT VKEDYPLICQ ETSCRYLAPE VFKNEAYDTK VDVFSFALIL QEMIEGCPPF SAKPENEVPK VYAAQERPPF RAPSKLYSHG LKELIEECWN
401: ENPTKRPTFG QILTRLDRIY NHLGQKRRWK VRPLKCFQNL EAMWKKDHSD LSTSSRSSRP NR

Best Arabidopsis Sequence Match ( AT4G18950.1 )
(BLAST)

001: MEEDYQQPRF TIGRQSSMAP EKIPEPSVHS EEEVFEDGEE IDGGVRLMYL ANEGDIEGIK ELIDSGIDAN YRDIDDRTAL HVAACQGLKD VVELLLDRKA
101: EVDPKDRWGS TPFADAIFYK NIDVIKILEI HGAKHPMAPM HVKTAREVPE YEINPSELDF TQSKEITKGT YCMAMWRGIQ VAVKKLDDEV LSDDDQVRKF
201: HDELALLQRL RHPNIVQFLG AVTQSNPMMI VTEYLPRGDL RELLKRKGQL KPATAVRYAL DIARGMSYLH EIKGDPIIHR DLEPSNILRD DSGHLKVADF
301: GVSKLVTVKE DKPFTCQDIS CRYIAPEVFT SEEYDTKADV FSFALIVQEM IEGRMPFAEK EDSEASEAYA GKHRPLFKAP SKNYPHGLKT LIEECWHEKP
401: AKRPTFREII KRLESILHHM GHKRQWRMRP LTCFQNFEHK KKHNWDLSSH DGSSSGSHL

Arabidopsis Description

At4g18950/F13C5_120 [Source:UniProtKB/TrEMBL;Acc:Q93Z30]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.