CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19106	Canola	mitochondrion	11.08	14.29
CDY15368	Canola	mitochondrion	5.93	12.71
CDY36424	Canola	cytosol	13.14	11.75
CDX98142	Canola	cytosol	13.14	11.75
CDX71872	Canola	cytosol, plastid	14.43	11.69
CDY05975	Canola	nucleus, plastid	14.43	11.69
CDY33786	Canola	cytosol	12.89	11.42
CDY16124	Canola	cytosol	12.89	11.42
CDX98397	Canola	plastid	13.66	11.13
CDX67815	Canola	plastid	13.66	11.13
CDX84758	Canola	mitochondrion	13.92	11.11
CDX89004	Canola	mitochondrion	13.4	11.11
CDX79441	Canola	mitochondrion	13.92	11.11
CDY00588	Canola	mitochondrion	13.4	11.11
CDX71924	Canola	mitochondrion	13.14	10.94
CDY15369	Canola	cytosol	7.73	10.2
CDX76504	Canola	cytosol	11.86	10.02
CDX99407	Canola	cytosol	11.34	9.59
CDX78907	Canola	cytosol	11.34	9.59
CDY19105	Canola	cytosol	3.35	7.47
CDY49253	Canola	cytosol	13.14	4.69
CDX71869	Canola	cytosol	2.58	3.06
CDX71871	Canola	cytosol	2.58	2.83

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	GO:A0A078CA17	EnsemblPlants:CDX71868	ProteinID:CDX71868	ProteinID:CDX71868.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0071555	EnsemblPlantsGene:GSBRNA2T00155602001	InterPro:Glyco_hydro_28
InterPro:IPR012334	PFAM:PF00295	ScanProsite:PS00502	PANTHER:PTHR31375	PANTHER:PTHR31375:SF2	InterPro:PbH1
InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	SignalP:SignalP-noTM	UniParc:UPI0004EED85E
SEG:seg	:	:	:	:	:

Description

BnaC08g30060D

Coordinates

chrLK031795:+:937910..940133

Molecular Weight (calculated)

41044.0 Da

IEP (calculated)

8.975

GRAVY (calculated)

-0.038

Length

388 amino acids

Sequence
(BLAST)

001: MSSPVLIILL LLLSISLSSA QTYNILSYGA KPDGKTDSTK ALTAVWAKAC ASVKPVTISI PKGRFLLRSI VFDGAKCKRK SVTFRIQGTL VAPSDYRVIG
101: NGNYWIFFQH LDGLSVYGGV LDAQGASLWS CKKSGQNCPS GATSIGFQSS SNVVISGLTS LNSQMFHVVI NGCRNVNIQG VKVSADGNSP NTDGIHVQSS
201: STVSILNSKI STGDDCVSIG PGTNGLWIEN VACGPGHGIS IGSLGKESVE AGVQNVTVKT ATFTGTENGV RIKSWARPSN GFAKNIRFQR CVMNNVQNPI
301: VIDQNYCPGN ENCPNQVSGI KISDVMFFDI HGTSATQVGV KFDCSSKKPC TGIRLQDVKL TYQNKPAMAD CSHAGGTEAG FQQPNSCL

Best Arabidopsis Sequence Match ( AT3G59850.2 )
(BLAST)

001: MLINKKQSIS QIRKYYIYLT LNRFKSHTPI TTFQLLPLSL TFKAMHSSLL IVLLFLLSVS SSSAQTYNIL SYGAKPDGKT DSTKAFTVLW AKACASVKPV
101: TILVPKGRFL LRSIIFDGSK CKRKSVTFRI QGTLVAPSDY RVIGKENYWI LFQHLDGISV YGGVLDAQGA SLWSCKKSGK NCPSGATSIG FQSSRNVVIS
201: GLTSLNSQMF HVAINGCSNV KLDGVKVSAD GNSPNTDGIH VQSSSTVSIL NSKISTGDDC VSIGPGTNGL WIENVACGPG HGISIGSLGK ESVEVGVQNI
301: TVKTATFTGT ENGVRIKSWA RPSNGFAKNI RFQHCVMNNV QNPIVIDQNY CPGNENCPNQ VSGIKISDVM FFDIHGTSAT EVGVKLDCSS KKPCTGIRIQ
401: DVKLTYRNKP ATTDCSHAGG SEAGFQRPNS CL

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LP65]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.