Factsheet for PGSC0003DMT400072865

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

cytosol: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400075691

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G14000.1	PGSC0003DMT400075691	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g013070.2.1	Tomato	cytosol	98.62	98.39
VIT_01s0182g00020.t01	Wine grape	cytosol	85.29	85.29
KRG89553	Soybean	nucleus	81.15	83.45
KRH50554	Soybean	cytosol, nucleus	80.69	83.37
CDX98142	Canola	cytosol	81.61	81.8
AT1G14000.1	Thale cress	cytosol	82.07	81.51
CDY36424	Canola	cytosol	81.15	81.34
CDY33786	Canola	cytosol	81.84	81.28
CDY16124	Canola	cytosol	81.61	81.05
KRH74933	Soybean	cytosol	79.31	80.8
Os07t0632800-01	Rice	plasma membrane	73.79	80.65
Bra026867.1-P	Field mustard	cytosol	81.15	77.58
GSMUA_Achr8P16850_001	Banana	cytosol	59.08	76.49
GSMUA_Achr6P10820_001	Banana	cytosol	80.46	76.25
EER99756	Sorghum	cytosol	74.48	73.3
Zm00001d022239_P001	Maize	cytosol, extracellular	73.79	72.95
TraesCS2A01G155500.1	Wheat	cytosol	73.79	72.46
TraesCS2D01G161300.1	Wheat	cytosol	74.02	71.24
HORVU2Hr1G028230.14	Barley	cytosol	74.02	70.93
TraesCS2B01G180500.1	Wheat	cytosol	73.56	70.8
Bra019692.1-P	Field mustard	nucleus	77.93	61.64
PGSC0003DMT400026617	Potato	cytosol	29.89	46.43
PGSC0003DMT400044544	Potato	cytosol	37.24	40.3
PGSC0003DMT400035023	Potato	cytosol	42.07	39.61
PGSC0003DMT400073140	Potato	cytosol	41.15	38.83
PGSC0003DMT400052486	Potato	nucleus, plastid	37.01	34.33
PGSC0003DMT400064944	Potato	mitochondrion, plastid	37.01	34.11
PGSC0003DMT400078613	Potato	cytosol	27.59	27.91

Protein Annotations

Gene3D:1.10.510.10	Gene3D:1.25.40.20	EntrezGene:102586604	MapMan:18.4.1.30	Gene3D:3.30.200.20	InterPro:Ankyrin_rpt
InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672
GO:GO:0004674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538
InterPro:IPR000719	InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770	InterPro:Kinase-like_dom_sf	UniProt:M1CR37
PFAM:PF07714	PFAM:PF12796	EnsemblPlantsGene:PGSC0003DMG400028346	PGSC:PGSC0003DMG400028346	EnsemblPlants:PGSC0003DMT400072865	PIRSF:PIRSF000654
PRINTS:PR00109	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PFscan:PS50088	PFscan:PS50297
PANTHER:PTHR44023	PANTHER:PTHR44023:SF6	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SMART:SM00248
SUPFAM:SSF48403	SUPFAM:SSF56112	InterPro:Ser-Thr/Tyr_kinase_cat_dom	InterPro:Ser/Thr_kinase_AS	UniParc:UPI000295458F	RefSeq:XP_006348750.1
SEG:seg	:	:	:	:	:

Description

Integrin-linked protein kinase [Source:PGSC_GENE;Acc:PGSC0003DMG400028346]

Coordinates

chr5:-:82985..88504

Molecular Weight (calculated)

49149.0 Da

IEP (calculated)

8.325

GRAVY (calculated)

-0.437

Length

435 amino acids

Sequence
(BLAST)

001: MSTSEGSSGS SAAAAVEVPV VSTEKKKEKS RVSKTSQILW HAHHNDAAAV RKLLEEDRTL VQARDYDNRT PLHVAALHGW IDVAKCLIDY GADVNAQDRW
101: RNTPLADAEG AKKSAMIELL KTYGGLSYGQ NGSHFEPRPV APPLPKKCDW EIDPTELDFS NSAIIGKGSF GEILKACWRG TPVAVKRILP NLSDDRLVIQ
201: DFRHEVNLLV KLRHPNIVQF LGAVTEKKPL MLITEYLRGG DLHQHLKEKG ALTPSTAINF AMDIARGMTY LHNEPNVIIH RDLKPRNVLL VNSNADHLKV
301: GDFGLSKLIR VQNSHDVYKM TGETGSYRYM APEVFKHRKY DKKVDVFSFA MILYEMLEGD PPLSHYEPYE AAKYVAEGHR PMFRAKGFTP ELKELVEECW
401: APDMNKRPSF LDILKRLEKI KDALPSEHHW HLFTS

Best Arabidopsis Sequence Match ( AT1G14000.1 )
(BLAST)

001: MSSDSPAAGD GGEQAAAGTS VPSPSYDKQK EKARVSRTSL ILWHAHQNDA AAVRKLLEED PTLVHARDYD KRTPLHVASL HGWIDVVKCL LEFGADVNAQ
101: DRWKNTPLAD AEGARKQKMI ELLKSHGGLS YGQNGSHFEP KPVPPPIPKK CDWEIEPAEL DFSNAAMIGK GSFGEIVKAY WRGTPVAVKR ILPSLSDDRL
201: VIQDFRHEVD LLVKLRHPNI VQFLGAVTER KPLMLITEYL RGGDLHQYLK EKGGLTPTTA VNFALDIARG MTYLHNEPNV IIHRDLKPRN VLLVNSSADH
301: LKVGDFGLSK LIKVQNSHDV YKMTGETGSY RYMAPEVFKH RRYDKKVDVF SFAMILYEML EGEPPFANHE PYEAAKHVSD GHRPTFRSKG CTPDLRELIV
401: KCWDADMNQR PSFLDILKRL EKIKETLPSD HHWGLFTS

Arabidopsis Description

VIKVIK [Source:UniProtKB/TrEMBL;Acc:A0A178W4T8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.