Factsheet for PGSC0003DMT400026617

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytoskeleton, cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g017490.1.1	Tomato	cytosol	98.21	62.64
VIT_15s0046g02840.t01	Wine grape	cytosol	48.21	44.41
VIT_15s0046g02850.t01	Wine grape	cytosol	71.79	37.22
PGSC0003DMT400072865	Potato	cytosol	46.43	29.89
PGSC0003DMT400044544	Potato	cytosol	42.5	29.6
PGSC0003DMT400073140	Potato	cytosol	39.64	24.08
PGSC0003DMT400035023	Potato	cytosol	39.64	24.03
PGSC0003DMT400064944	Potato	mitochondrion, plastid	37.86	22.46
PGSC0003DMT400052486	Potato	nucleus, plastid	37.14	22.17
PGSC0003DMT400078613	Potato	cytosol	32.86	21.4

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:107059610	MapMan:18.4.1.30	Gene3D:3.30.200.20	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004672	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538
InterPro:IPR000719	InterPro:Kinase-like_dom_sf	UniProt:M1ANG1	PFAM:PF07714	EnsemblPlantsGene:PGSC0003DMG402010281	PGSC:PGSC0003DMG402010281
EnsemblPlants:PGSC0003DMT400026617	PIRSF:PIRSF000654	PRINTS:PR00109	ScanProsite:PS00107	PFscan:PS50011	PANTHER:PTHR44023
PANTHER:PTHR44023:SF2	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SUPFAM:SSF56112	InterPro:Ser-Thr/Tyr_kinase_cat_dom	UniParc:UPI0002966488

Description

Integrin-linked protein kinase [Source:PGSC_GENE;Acc:PGSC0003DMG402010281]

Coordinates

chr10:-:38912954..38919046

Molecular Weight (calculated)

32034.9 Da

IEP (calculated)

9.539

GRAVY (calculated)

-0.354

Length

280 amino acids

Sequence
(BLAST)

001: MKEATLIGEG AYGEVYLVKW RGTEVAAKTI RASIASNPMV KNAFMKELAL WKKLRHPNIV QFLGVLKQSD RLIFLTEYLR NGSLYDQLRK KGKLDPLTAV
101: AYALDIARGM NYLHQLKPHS IIHRDLTPRN VLQDEAGHLK VTDFGLSKIA QQKDSYGYKM TGGTGSYRYM APEVYRRESY GKSVDVFSFA LIVHEMFLGG
201: PSNREEAAEK VADKTAYEDY RPHLASYIFP EQIKTLLREC WHKNPDRRPS FQEIIDRLEK IHATLQEKIV LGTCCSCMIL

Best Arabidopsis Sequence Match ( AT1G14000.1 )
(BLAST)

001: MSSDSPAAGD GGEQAAAGTS VPSPSYDKQK EKARVSRTSL ILWHAHQNDA AAVRKLLEED PTLVHARDYD KRTPLHVASL HGWIDVVKCL LEFGADVNAQ
101: DRWKNTPLAD AEGARKQKMI ELLKSHGGLS YGQNGSHFEP KPVPPPIPKK CDWEIEPAEL DFSNAAMIGK GSFGEIVKAY WRGTPVAVKR ILPSLSDDRL
201: VIQDFRHEVD LLVKLRHPNI VQFLGAVTER KPLMLITEYL RGGDLHQYLK EKGGLTPTTA VNFALDIARG MTYLHNEPNV IIHRDLKPRN VLLVNSSADH
301: LKVGDFGLSK LIKVQNSHDV YKMTGETGSY RYMAPEVFKH RRYDKKVDVF SFAMILYEML EGEPPFANHE PYEAAKHVSD GHRPTFRSKG CTPDLRELIV
401: KCWDADMNQR PSFLDILKRL EKIKETLPSD HHWGLFTS

Arabidopsis Description

VIKVIK [Source:UniProtKB/TrEMBL;Acc:A0A178W4T8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.