CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69339
CDX72658
CDX73678
CDX75681
CDX92401
CDX95314
CDY23174
CDY31619

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37870.1	CDX73678	AT3G51920.1	17360592
AT4G37870.1	CDX95314	AT3G51920.1	17360592
AT4G37870.1	CDY23174	AT3G51920.1	17360592
AT4G37870.1	CDX69339	AT4G37870.1	21798944
AT4G37870.1	CDX72658	AT4G37870.1	21798944
AT4G37870.1	CDX75681	AT4G37870.1	21798944
AT4G37870.1	CDY31619	AT4G37870.1	21798944
AT4G37870.1	CDX92401	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX72658	Canola	cytosol	96.11	96.71
Bra011792.1-P	Field mustard	cytosol	99.07	95.07
CDX75681	Canola	cytosol	99.07	95.07
AT4G37870.1	Thale cress	cytosol	94.86	90.76
CDY31619	Canola	cytosol	75.39	90.3
VIT_00s1995g00010.t01	Wine grape	cytosol	57.01	82.06
KRH52864	Soybean	cytosol	46.11	80.87
KRH74430	Soybean	endoplasmic reticulum	81.15	78.94
KXG39751	Sorghum	cytosol	81.0	78.91
KRH39528	Soybean	nucleus	81.15	78.82
Solyc04g076880.2.1	Tomato	cytosol, extracellular, nucleus, plastid	80.53	78.1
PGSC0003DMT400016354	Potato	cytosol	80.37	77.95
KRH75627	Soybean	cytosol	77.88	77.16
KRH45461	Soybean	nucleus	75.7	77.14
TraesCS4D01G220500.1	Wheat	cytosol	80.06	76.95
TraesCS4B01G220200.1	Wheat	cytosol	79.75	76.42
CDY52537	Canola	cytosol	78.97	75.9
Solyc12g088160.1.1	Tomato	cytosol, plastid	76.79	75.73
CDY37839	Canola	cytosol	78.35	75.41
CDY08764	Canola	cytosol	78.19	75.38
CDY45615	Canola	cytosol	78.19	75.38
PGSC0003DMT400041521	Potato	cytosol	76.79	75.27
PGSC0003DMT400005163	Potato	cytosol	76.48	74.96
KRH62155	Soybean	cytosol, nucleus	77.73	74.26
CDY08763	Canola	extracellular	30.69	72.69
TraesCS4A01G083900.1	Wheat	mitochondrion	80.22	71.33
HORVU4Hr1G062440.2	Barley	cytosol	71.81	68.5
VIT_00s2576g00010.t01	Wine grape	cytosol	24.77	68.24
PGSC0003DMT400005170	Potato	cytosol	35.67	66.38
KRH37948	Soybean	cytosol	9.97	50.39
Zm00001d008318_P001	Maize	cytosol	17.13	49.11
GSMUA_Achr4P20850_001	Banana	cytosol	9.03	48.74
VIT_00s2840g00010.t01	Wine grape	cytosol	6.7	48.31
Os10t0204300-01	Rice	cytosol	3.43	45.83

Protein Annotations

KEGG:00010+4.1.1.49	KEGG:00020+4.1.1.49	KEGG:00620+4.1.1.49	KEGG:00710+4.1.1.49	Gene3D:2.170.8.10	MapMan:3.10.1
Gene3D:3.40.449.10	Gene3D:3.90.228.20	GO:A0A078BZE7	EnsemblPlants:CDX69339	ProteinID:CDX69339	ProteinID:CDX69339.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004611	GO:GO:0004612	GO:GO:0005488
GO:GO:0005524	GO:GO:0005975	GO:GO:0006094	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0017076	EnsemblPlantsGene:GSBRNA2T00131184001	InterPro:IPR008210	InterPro:IPR013035	HAMAP:MF_00453	InterPro:PEPCK_ATP_CS
InterPro:PEP_carboxykinase_ATP	InterPro:PEP_carboxykinase_C	InterPro:PEP_carboxykinase_N	PFAM:PF01293	PIRSF:PIRSF006294	ScanProsite:PS00532
PANTHER:PTHR30031	PANTHER:PTHR30031:SF4	MetaCyc:PWY-561	MetaCyc:PWY-7117	SUPFAM:SSF53795	SUPFAM:SSF68923
TIGRFAMs:TIGR00224	UniPathway:UPA00138	UniParc:UPI0004EEE60E	SEG:seg	:	:

Description

BnaC01g01140D

Coordinates

chrLK031789:-:4259023..4262594

Molecular Weight (calculated)

70418.6 Da

IEP (calculated)

6.761

GRAVY (calculated)

-0.335

Length

642 amino acids

Sequence
(BLAST)

001: MSAGNGNPNG DGGFSFPKGP AMPKITTGAK RGSEICHDDS GPTVKATTID ELHSLQKKRS APTTPINQSG AAAFSAVSEE ERQKIQLQSI SASLASLTRE
101: SGPKVVRGDP AEKKADGSTT PAYAHGQHHS IFSPDLGAVS DSSLKFTHVL YNLSPAELYE QAIKYEKGSF ITSNGALATL SGAKTGRAPR DKRVVRDATT
201: EGELWWGKGS PNIEMDEHTF MVNRERAVDY LNSLEKVFVN DQFLNWDPEN RIKVRIVSAR AYHSLFMHNM CIRPTPEELE SFGTPDFTIY NAGQFPCNRY
301: THYMTSSTSV DLNLSRREMV ILGTQYAGEM KKGLFSVMHY LMPKRRILSL HSGCNMGKEG DVALFFGLSG TGKTTLSTDH NRYLIGDDEH CWTETGVSNI
401: EGGCYAKCVD LSREKEPDIW NAIKFGTVLE NVVFDEHTRE VDYSDKSVTE NTRAAYPIEF IPNAKIPCVG PHPKNVILLA CDAFGVLPPV SKLNLAQTMY
501: HFISGYTALV AGTEDGIKEP TATFSACFGA AFIMLHPTKY AAMLAEKMKT QGATGWLVNT GCLLKANYKK TEIFGFEIPT EIEGIPSEIL DPINSWSDKN
601: AHKETLLKLG GLFKKNFETF ASHKIGVDGK LTEEILAAGP IF

Best Arabidopsis Sequence Match ( AT4G37870.1 )
(BLAST)

001: MSAGNGNATN GDGGFSFPKG PVMPKITTGA AKRGSGVCHD DSGPTVNATT IDELHSLQKK RSAPTTPINQ NAAAAFAAVS EEERQKIQLQ SISASLASLT
101: RESGPKVVRG DPAEKKTDGS TTPAYAHGQH HSIFSPATGA VSDSSLKFTH VLYNLSPAEL YEQAIKYEKG SFITSNGALA TLSGAKTGRA PRDKRVVRDA
201: TTEDELWWGK GSPNIEMDEH TFMVNRERAV DYLNSLEKVF VNDQYLNWDP ENRIKVRIVS ARAYHSLFMH NMCIRPTQEE LESFGTPDFT IYNAGQFPCN
301: RYTHYMTSST SVDLNLARRE MVILGTQYAG EMKKGLFSVM HYLMPKRRIL SLHSGCNMGK DGDVALFFGL SGTGKTTLST DHNRYLIGDD EHCWTETGVS
401: NIEGGCYAKC VDLSREKEPD IWNAIKFGTV LENVVFDEHT REVDYSDKSV TENTRAAYPI EFIPNAKIPC VGPHPTNVIL LACDAFGVLP PVSKLNLAQT
501: MYHFISGYTA LVAGTEDGIK EPTATFSACF GAAFIMLHPT KYAAMLAEKM KSQGATGWLV NTGWSGGSYG VGNRIKLAYT RKIIDAIHSG SLLKANYKKT
601: EIFGFEIPTE IEGIPSEILD PVNSWSDKKA HKDTLVKLGG LFKKNFEVFA NHKIGVDGKL TEEILAAGPI F

Arabidopsis Description

PCKAPhosphoenolpyruvate carboxykinase (ATP)-like protein [Source:UniProtKB/TrEMBL;Acc:Q0WWL8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.