Factsheet for VIT_00s1995g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s1995g00010.t01
VIT_00s2576g00010.t01
VIT_00s2840g00010.t01
VIT_06s0009g01910.t01
VIT_08s0040g00470.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37870.1	VIT_06s0009g01910.t01	AT2G41090.1	17360592
AT4G37870.1	VIT_08s0040g00470.t01	AT2G41090.1	17360592
AT4G37870.1	VIT_00s1995g00010.t01	AT4G37870.1	21798944
AT4G37870.1	VIT_00s2576g00010.t01	AT4G37870.1	21798944
AT4G37870.1	VIT_00s2840g00010.t01	AT4G37870.1	21798944
AT4G37870.1	VIT_06s0009g01910.t01	AT5G21274.1	17360592
AT4G37870.1	VIT_08s0040g00470.t01	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0205g00070.t01	Wine grape	cytosol	11.66	94.55
KRH37948	Soybean	cytosol	19.96	70.08
CDY31619	Canola	cytosol	81.61	67.91
KRH39528	Soybean	nucleus	90.36	60.97
KRH74430	Soybean	endoplasmic reticulum	90.13	60.91
KRH45461	Soybean	nucleus	85.43	60.48
KXG39751	Sorghum	cytosol	87.67	59.33
KRH75627	Soybean	cytosol	85.65	58.95
Bra017856.1-P	Field mustard	cytosol	87.89	58.95
CDX75681	Canola	cytosol	87.89	58.59
Bra011792.1-P	Field mustard	cytosol	87.67	58.45
AT4G37870.1	Thale cress	cytosol	87.89	58.42
TraesCS4D01G220500.1	Wheat	cytosol	87.22	58.23
TraesCS4B01G220200.1	Wheat	cytosol	87.44	58.21
CDX72658	Canola	cytosol	82.51	57.68
HORVU4Hr1G062440.2	Barley	cytosol	87.0	57.65
CDX69339	Canola	cytosol	82.06	57.01
TraesCS4A01G083900.1	Wheat	mitochondrion	87.22	53.88
VIT_00s2576g00010.t01	Wine grape	cytosol	0.67	1.29
VIT_00s2840g00010.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

KEGG:00010+4.1.1.49	KEGG:00020+4.1.1.49	KEGG:00620+4.1.1.49	KEGG:00710+4.1.1.49	EntrezGene:100256754	wikigene:100256754
Gene3D:2.170.8.10	MapMan:3.10.1	Gene3D:3.40.449.10	Gene3D:3.90.228.20	ProteinID:CCB59214	ProteinID:CCB59214.1
UniProt:F6HX00	EMBL:FN596468	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004611
GO:GO:0004612	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0005829	GO:GO:0005975	GO:GO:0006094
GO:GO:0006950	GO:GO:0007154	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009605
GO:GO:0009607	GO:GO:0009817	GO:GO:0009987	GO:GO:0009991	GO:GO:0016020	GO:GO:0016036
GO:GO:0017076	GO:GO:0046686	InterPro:IPR008210	InterPro:IPR013035	EntrezGene:LOC100256754	wikigene:LOC100256754
HAMAP:MF_00453	InterPro:PEPCK_ATP_CS	InterPro:PEP_carboxykinase_ATP	InterPro:PEP_carboxykinase_C	InterPro:PEP_carboxykinase_N	PFAM:PF01293
PIRSF:PIRSF006294	ScanProsite:PS00532	PANTHER:PTHR30031	PANTHER:PTHR30031:SF4	SUPFAM:SSF53795	SUPFAM:SSF68923
TIGRFAMs:TIGR00224	UniParc:UPI00015CE66C	ArrayExpress:VIT_00s1995g00010	EnsemblPlantsGene:VIT_00s1995g00010	EnsemblPlants:VIT_00s1995g00010.t01	unigene:Vvi.11515
unigene:Vvi.6733	RefSeq:XP_003635615	RefSeq:XP_003635615.1	SEG:seg	:	:

Description

No Description!

Coordinates

chrUn:+:40854331..40857313

Molecular Weight (calculated)

49630.4 Da

IEP (calculated)

6.742

GRAVY (calculated)

-0.210

Length

446 amino acids

Sequence
(BLAST)

001: MDGNNSFSIC DFQVFVNDQF LNWDPENRLK VRIVSARAYH SLFMHNMCIR PTPEELENFG TPDFTIYNAG QFPCNRFTHY MTSSTSVDLN LARREMVILG
101: TQYAGEMKKG LFSVMHYLMP KRQILSLHSG CNIGKDGDVA LFFGLSGTGK TTLSTDHNRY LIGDDEHCWG DNGVSNIEGG CYAKCIDLSR EKEPDIFNAI
201: KFGTVLENVV FDEHTREVDY TDKSVTENTR ASYPIEYIPN AKLPCVGPHP KNVILLACDA FGVLPPVSKL NLAQTMYHFI SGYTALVAGT EEGVKEPQAT
301: FSACFGAAFI MLHPTKYAAM LAEKMQKHGA TAWLVNTGWS GGSYGSGKRI KLAHTRKIID AIHSGSLLKA NYKKTQVFGL EIPTEVEGVP SEILDPVNTW
401: TDKKAYDETL LKLAGLFKKN FEVFANYKIG KDNKLTEEIV AAGPIF

Best Arabidopsis Sequence Match ( AT4G37870.1 )
(BLAST)

001: MSAGNGNATN GDGGFSFPKG PVMPKITTGA AKRGSGVCHD DSGPTVNATT IDELHSLQKK RSAPTTPINQ NAAAAFAAVS EEERQKIQLQ SISASLASLT
101: RESGPKVVRG DPAEKKTDGS TTPAYAHGQH HSIFSPATGA VSDSSLKFTH VLYNLSPAEL YEQAIKYEKG SFITSNGALA TLSGAKTGRA PRDKRVVRDA
201: TTEDELWWGK GSPNIEMDEH TFMVNRERAV DYLNSLEKVF VNDQYLNWDP ENRIKVRIVS ARAYHSLFMH NMCIRPTQEE LESFGTPDFT IYNAGQFPCN
301: RYTHYMTSST SVDLNLARRE MVILGTQYAG EMKKGLFSVM HYLMPKRRIL SLHSGCNMGK DGDVALFFGL SGTGKTTLST DHNRYLIGDD EHCWTETGVS
401: NIEGGCYAKC VDLSREKEPD IWNAIKFGTV LENVVFDEHT REVDYSDKSV TENTRAAYPI EFIPNAKIPC VGPHPTNVIL LACDAFGVLP PVSKLNLAQT
501: MYHFISGYTA LVAGTEDGIK EPTATFSACF GAAFIMLHPT KYAAMLAEKM KSQGATGWLV NTGWSGGSYG VGNRIKLAYT RKIIDAIHSG SLLKANYKKT
601: EIFGFEIPTE IEGIPSEILD PVNSWSDKKA HKDTLVKLGG LFKKNFEVFA NHKIGVDGKL TEEILAAGPI F

Arabidopsis Description

PCKAPhosphoenolpyruvate carboxykinase (ATP)-like protein [Source:UniProtKB/TrEMBL;Acc:Q0WWL8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.