Factsheet for VIT_00s2576g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s1995g00010.t01
VIT_00s2576g00010.t01
VIT_00s2840g00010.t01
VIT_06s0009g01910.t01
VIT_08s0040g00470.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37870.1	VIT_06s0009g01910.t01	AT2G41090.1	17360592
AT4G37870.1	VIT_08s0040g00470.t01	AT2G41090.1	17360592
AT4G37870.1	VIT_00s1995g00010.t01	AT4G37870.1	21798944
AT4G37870.1	VIT_00s2576g00010.t01	AT4G37870.1	21798944
AT4G37870.1	VIT_00s2840g00010.t01	AT4G37870.1	21798944
AT4G37870.1	VIT_06s0009g01910.t01	AT5G21274.1	17360592
AT4G37870.1	VIT_08s0040g00470.t01	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s2840g00010.t01	Wine grape	cytosol	31.33	82.02
CDX69339	Canola	cytosol	68.24	24.77
CDX72658	Canola	cytosol	66.09	24.14
Bra011792.1-P	Field mustard	cytosol	68.67	23.92
CDX75681	Canola	cytosol	68.67	23.92
KXG39751	Sorghum	cytosol	67.38	23.82
AT4G37870.1	Thale cress	cytosol	66.09	22.95
TraesCS4D01G220500.1	Wheat	cytosol	65.67	22.9
Bra017856.1-P	Field mustard	cytosol	64.38	22.56
TraesCS4B01G220200.1	Wheat	cytosol	63.95	22.24
TraesCS4A01G083900.1	Wheat	mitochondrion	66.52	21.47
CDY31619	Canola	cytosol	42.06	18.28
HORVU4Hr1G062440.2	Barley	cytosol	43.35	15.01
VIT_00s1995g00010.t01	Wine grape	cytosol	1.29	0.67
VIT_07s0205g00070.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

KEGG:00010+4.1.1.49	KEGG:00020+4.1.1.49	KEGG:00620+4.1.1.49	KEGG:00710+4.1.1.49	EntrezGene:100854135	wikigene:100854135
EntrezGene:100855248	wikigene:100855248	MapMan:3.10.1	Gene3D:3.40.449.10	ProteinID:CCB48508	ProteinID:CCB48508.1
ProteinID:CCB59218	ProteinID:CCB59218.1	UniProt:F6H8G5	EMBL:FN595492	EMBL:FN596490	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004611	GO:GO:0004612	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005975
GO:GO:0006094	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0017076	InterPro:IPR008210
EntrezGene:LOC100854135	wikigene:LOC100854135	EntrezGene:LOC100855248	wikigene:LOC100855248	InterPro:PEP_carboxykinase_ATP	InterPro:PEP_carboxykinase_N
PFAM:PF01293	PANTHER:PTHR30031	PANTHER:PTHR30031:SF4	SUPFAM:SSF68923	TIGR:TC59556	UniParc:UPI0002108172
ArrayExpress:VIT_00s2576g00010	EnsemblPlantsGene:VIT_00s2576g00010	EnsemblPlants:VIT_00s2576g00010.t01	unigene:Vvi.24616	RefSeq:XP_003635667	RefSeq:XP_003635667.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrUn:+:42398626..42400396

Molecular Weight (calculated)

25617.9 Da

IEP (calculated)

7.434

GRAVY (calculated)

-0.679

Length

233 amino acids

Sequence
(BLAST)

001: MAGNGNGHEE FSFNNGVVAR NGLAKVQTHK KQSEICHDDS TTPVKAQTID ELHSLQKKKS APTTPIKGSE GAFATISDEE RQQLQLQSIS ASLASLTRET
101: GPKVVKGDPA RKTDTTPKSH VTHHHFTPTL NISDSALKFT HILYNLSPGE LYEQAIKYEH GSFITSSGAL ATLSGAKTGR SPRDKRVVKD ETTEVELWWG
201: KGSPNIEMDE HTFMVNRERA VDYLNSLDKV SSF

Best Arabidopsis Sequence Match ( AT4G37870.1 )
(BLAST)

001: MSAGNGNATN GDGGFSFPKG PVMPKITTGA AKRGSGVCHD DSGPTVNATT IDELHSLQKK RSAPTTPINQ NAAAAFAAVS EEERQKIQLQ SISASLASLT
101: RESGPKVVRG DPAEKKTDGS TTPAYAHGQH HSIFSPATGA VSDSSLKFTH VLYNLSPAEL YEQAIKYEKG SFITSNGALA TLSGAKTGRA PRDKRVVRDA
201: TTEDELWWGK GSPNIEMDEH TFMVNRERAV DYLNSLEKVF VNDQYLNWDP ENRIKVRIVS ARAYHSLFMH NMCIRPTQEE LESFGTPDFT IYNAGQFPCN
301: RYTHYMTSST SVDLNLARRE MVILGTQYAG EMKKGLFSVM HYLMPKRRIL SLHSGCNMGK DGDVALFFGL SGTGKTTLST DHNRYLIGDD EHCWTETGVS
401: NIEGGCYAKC VDLSREKEPD IWNAIKFGTV LENVVFDEHT REVDYSDKSV TENTRAAYPI EFIPNAKIPC VGPHPTNVIL LACDAFGVLP PVSKLNLAQT
501: MYHFISGYTA LVAGTEDGIK EPTATFSACF GAAFIMLHPT KYAAMLAEKM KSQGATGWLV NTGWSGGSYG VGNRIKLAYT RKIIDAIHSG SLLKANYKKT
601: EIFGFEIPTE IEGIPSEILD PVNSWSDKKA HKDTLVKLGG LFKKNFEVFA NHKIGVDGKL TEEILAAGPI F

Arabidopsis Description

PCKAPhosphoenolpyruvate carboxykinase (ATP)-like protein [Source:UniProtKB/TrEMBL;Acc:Q0WWL8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.