Factsheet for Solyc04g076880.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, nucleus, cytosol

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 22364583
plastid: 26371478
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008950.2.1
Solyc04g076880.2.1
Solyc10g077010.1.1
Solyc10g081170.1.1
Solyc11g072240.1.1
Solyc12g088160.1.1
Solyc12g099990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37870.1	Solyc01g008950.2.1	AT2G41090.1	17360592
AT4G37870.1	Solyc10g077010.1.1	AT2G41090.1	17360592
AT4G37870.1	Solyc10g081170.1.1	AT2G41090.1	17360592
AT4G37870.1	Solyc11g072240.1.1	AT2G41090.1	17360592
AT4G37870.1	Solyc12g099990.1.1	AT2G41090.1	17360592
AT4G37870.1	Solyc04g076880.2.1	AT4G37870.1	21798944
AT4G37870.1	Solyc12g088160.1.1	AT4G37870.1	21798944
AT4G37870.1	Solyc01g008950.2.1	AT5G21274.1	17360592
AT4G37870.1	Solyc10g077010.1.1	AT5G21274.1	17360592
AT4G37870.1	Solyc10g081170.1.1	AT5G21274.1	17360592
AT4G37870.1	Solyc11g072240.1.1	AT5G21274.1	17360592
AT4G37870.1	Solyc12g099990.1.1	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400016354	Potato	cytosol	98.64	98.64
Solyc12g088160.1.1	Tomato	cytosol, plastid	83.69	85.1
KRH52864	Soybean	cytosol	45.92	83.06
CDX72658	Canola	cytosol	78.25	81.19
CDY31619	Canola	cytosol	65.26	80.6
CDX69339	Canola	cytosol	78.1	80.53
KXG39751	Sorghum	cytosol	79.0	79.36
Bra017856.1-P	Field mustard	cytosol	78.7	78.35
CDX75681	Canola	cytosol	79.0	78.18
Bra011792.1-P	Field mustard	cytosol	78.85	78.03
TraesCS4D01G220500.1	Wheat	cytosol	78.55	77.84
AT4G37870.1	Thale cress	cytosol	78.55	77.5
TraesCS4B01G220200.1	Wheat	cytosol	78.4	77.46
KRH62155	Soybean	cytosol, nucleus	78.4	77.23
TraesCS4A01G083900.1	Wheat	mitochondrion	78.55	72.02
HORVU4Hr1G062440.2	Barley	cytosol	70.09	68.94
Os10t0204300-01	Rice	cytosol	3.63	50.0
Zm00001d008318_P001	Maize	cytosol	16.01	47.32
GSMUA_Achr4P20850_001	Banana	cytosol	8.16	45.38

Protein Annotations

KEGG:00010+4.1.1.49	KEGG:00020+4.1.1.49	KEGG:00620+4.1.1.49	KEGG:00710+4.1.1.49	Gene3D:2.170.8.10	MapMan:3.10.1
Gene3D:3.40.449.10	Gene3D:3.90.228.20	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004611	GO:GO:0004612	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005975	GO:GO:0006094	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740
GO:GO:0017076	InterPro:IPR008210	InterPro:IPR013035	UniProt:K4BUC5	HAMAP:MF_00453	InterPro:PEPCK_ATP_CS
InterPro:PEP_carboxykinase_ATP	InterPro:PEP_carboxykinase_C	InterPro:PEP_carboxykinase_N	PFAM:PF01293	ScanProsite:PS00532	PANTHER:PTHR30031
PANTHER:PTHR30031:SF4	SUPFAM:SSF53795	SUPFAM:SSF68923	EnsemblPlantsGene:Solyc04g076880.2	EnsemblPlants:Solyc04g076880.2.1	TIGRFAMs:TIGR00224
UniParc:UPI0002766056	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4:+:61816548..61822360

Molecular Weight (calculated)

73469.3 Da

IEP (calculated)

6.846

GRAVY (calculated)

-0.390

Length

662 amino acids

Sequence
(BLAST)

001: MASNGVGNGE FSFDNKRRTG LPKIQTQKTE DENVVCHDDS ATPVKAQTLE ELHSLQKKKS APTTPIKSPH VFGVAVSEEE RQKQQLQSIS ASLASLTRET
101: GPKVVKGDPA RQAETPKVQQ PVHHHHTPAL NISDSGLKFT HILYNLSPAE LYEQAIKYEK GSFITSSGAL ATLSGAKTGR SPRDKRVVRD ETTEDDLWWG
201: KGSPNIEMDE QTFLINRERA VDYLCSLEKV FVNDQFLNWD PNNRIKVRIV SARAYHSLFM HNMCIRPTPE ELEDFGTPDF TIYNAGQFPC NRYTHYMTSS
301: TSIDINLARR EMVILGTQYA GEMKKGLFGV MHYLMPKRQI LSLHSGCNMG KEGDVALFFG LSGTGKTTLS TDHNRYLIGD DEHCWSDHGV SNIEGGCYAK
401: CIDLAREKEP DIWNAIKFGT VLENVVFEEH TREVDYTDKS VTENTRAAYP IEYIPNAKIP CVGPHPKNVI LLACDAFGVL PPVSKLNLAQ TMYHFISGYT
501: ALVAGTEDGI KEPTATFSAC FGAAFIMLHP TKYAAMLAEK MLKHGATGWL VNTGWSGGSY GSGSRIKLAY TRKIIDAIHS GDLLKAEYKK TEVFGLEIPT
601: ALEGVPSEIL DPVNTWPDKK AHKDTLLKLG GLFRKNFEVF TNYKIGSDSN LTEEILAAGP NF

Best Arabidopsis Sequence Match ( AT4G37870.1 )
(BLAST)

001: MSAGNGNATN GDGGFSFPKG PVMPKITTGA AKRGSGVCHD DSGPTVNATT IDELHSLQKK RSAPTTPINQ NAAAAFAAVS EEERQKIQLQ SISASLASLT
101: RESGPKVVRG DPAEKKTDGS TTPAYAHGQH HSIFSPATGA VSDSSLKFTH VLYNLSPAEL YEQAIKYEKG SFITSNGALA TLSGAKTGRA PRDKRVVRDA
201: TTEDELWWGK GSPNIEMDEH TFMVNRERAV DYLNSLEKVF VNDQYLNWDP ENRIKVRIVS ARAYHSLFMH NMCIRPTQEE LESFGTPDFT IYNAGQFPCN
301: RYTHYMTSST SVDLNLARRE MVILGTQYAG EMKKGLFSVM HYLMPKRRIL SLHSGCNMGK DGDVALFFGL SGTGKTTLST DHNRYLIGDD EHCWTETGVS
401: NIEGGCYAKC VDLSREKEPD IWNAIKFGTV LENVVFDEHT REVDYSDKSV TENTRAAYPI EFIPNAKIPC VGPHPTNVIL LACDAFGVLP PVSKLNLAQT
501: MYHFISGYTA LVAGTEDGIK EPTATFSACF GAAFIMLHPT KYAAMLAEKM KSQGATGWLV NTGWSGGSYG VGNRIKLAYT RKIIDAIHSG SLLKANYKKT
601: EIFGFEIPTE IEGIPSEILD PVNSWSDKKA HKDTLVKLGG LFKKNFEVFA NHKIGVDGKL TEEILAAGPI F

Arabidopsis Description

PCKAPhosphoenolpyruvate carboxykinase (ATP)-like protein [Source:UniProtKB/TrEMBL;Acc:Q0WWL8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.