CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89812
KRG94975
KRH18664
KRH37948
KRH39528
KRH45461
KRH52864
KRH62155
KRH74430
KRH75627

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37870.1	KRG89812	AT2G41090.1	17360592
AT4G37870.1	KRG94975	AT2G41090.1	17360592
AT4G37870.1	KRH18664	AT2G41090.1	17360592
AT4G37870.1	KRH37948	AT4G37870.1	21798944
AT4G37870.1	KRH39528	AT4G37870.1	21798944
AT4G37870.1	KRH45461	AT4G37870.1	21798944
AT4G37870.1	KRH52864	AT4G37870.1	21798944
AT4G37870.1	KRH62155	AT4G37870.1	21798944
AT4G37870.1	KRH74430	AT4G37870.1	21798944
AT4G37870.1	KRH75627	AT4G37870.1	21798944
AT4G37870.1	KRG89812	AT5G21274.1	17360592
AT4G37870.1	KRG94975	AT5G21274.1	17360592
AT4G37870.1	KRH18664	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31619	Canola	cytosol	79.78	54.48
KRH62155	Soybean	cytosol, nucleus	96.45	52.53
Os10t0204300-01	Rice	cytosol	6.56	50.0
KRH45461	Soybean	nucleus	84.97	49.37
KRH74430	Soybean	endoplasmic reticulum	87.43	48.48
KRH39528	Soybean	nucleus	87.16	48.26
KXG39751	Sorghum	cytosol	86.61	48.1
KRH37948	Soybean	cytosol	16.67	48.03
Bra017856.1-P	Field mustard	cytosol	86.89	47.82
AT4G37870.1	Thale cress	cytosol	87.16	47.54
CDX75681	Canola	cytosol	86.89	47.53
Bra011792.1-P	Field mustard	cytosol	86.61	47.38
KRH75627	Soybean	cytosol	83.88	47.38
TraesCS4D01G220500.1	Wheat	cytosol	86.07	47.16
TraesCS4B01G220200.1	Wheat	cytosol	86.07	47.01
CDX72658	Canola	cytosol	81.42	46.71
Solyc12g088160.1.1	Tomato	cytosol, plastid	83.06	46.7
HORVU4Hr1G062440.2	Barley	cytosol	85.52	46.51
PGSC0003DMT400041521	Potato	cytosol	83.06	46.41
PGSC0003DMT400005163	Potato	cytosol	82.79	46.26
CDX69339	Canola	cytosol	80.87	46.11
Solyc04g076880.2.1	Tomato	cytosol, extracellular, nucleus, plastid	83.06	45.92
PGSC0003DMT400016354	Potato	cytosol	82.79	45.77
TraesCS4A01G083900.1	Wheat	mitochondrion	86.07	43.63
PGSC0003DMT400005170	Potato	cytosol	28.42	30.14
Zm00001d008318_P001	Maize	cytosol	14.75	24.11
GSMUA_Achr4P20850_001	Banana	cytosol	0.55	1.68

Protein Annotations

KEGG:00010+4.1.1.49	KEGG:00020+4.1.1.49	KEGG:00620+4.1.1.49	KEGG:00710+4.1.1.49	MapMan:3.10.1	Gene3D:3.40.449.10
Gene3D:3.90.228.20	EMBL:ACUP02003439	EnsemblPlantsGene:GLYMA_06G091500	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004611	GO:GO:0004612	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005975	GO:GO:0006094	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0017076	UniProt:I1K9K7	InterPro:IPR008210	InterPro:IPR013035
EnsemblPlants:KRH52864	ProteinID:KRH52864	ProteinID:KRH52864.1	ProteinID:KRH52865.1	InterPro:PEPCK_ATP_CS	InterPro:PEP_carboxykinase_ATP
InterPro:PEP_carboxykinase_C	InterPro:PEP_carboxykinase_N	PFAM:PF01293	ScanProsite:PS00532	PANTHER:PTHR30031	PANTHER:PTHR30031:SF4
MetaCyc:PWY-561	MetaCyc:PWY-7117	SUPFAM:SSF53795	SUPFAM:SSF68923	UniParc:UPI0002962BAB	SEG:seg

Description

hypothetical protein

Coordinates

chr6:-:7175769..7178554

Molecular Weight (calculated)

40472.6 Da

IEP (calculated)

7.258

GRAVY (calculated)

-0.185

Length

366 amino acids

Sequence
(BLAST)

001: MHNMCIRPTP KELEEFGTPD FTIYNAGLFP CNRYTHYMTS STSIDINIAR KEMVILGTQY AGEMKKGLFG LMHYLMPKRY ILSLHSGSNM GKDGDVALFF
101: GLSGTGKTTL STYQNRYLIG DDEHCWSENG VSNIEGGCYA KCVDLSKDKE PDIWNAIKFG TVLENVVFDE HTREVDFSDK SVTENTRAAY PIEYIPNAKI
201: PCVAPHAKNV ILLACDAFGV LPPVSKLNLA QTMYHFISGY TALVAGTEDG IKEPQATFSA CFGAAFIMMP PTKYAAMLAE KMQKHGATGW LVNTGWSGGS
301: HGLGNRIKLA YTRKIIDAIQ SDKKTYQDTL LKLASLFKKN FDGFTTYKIG GDQKLTEEIV SAGPIF

Best Arabidopsis Sequence Match ( AT4G37870.1 )
(BLAST)

001: MSAGNGNATN GDGGFSFPKG PVMPKITTGA AKRGSGVCHD DSGPTVNATT IDELHSLQKK RSAPTTPINQ NAAAAFAAVS EEERQKIQLQ SISASLASLT
101: RESGPKVVRG DPAEKKTDGS TTPAYAHGQH HSIFSPATGA VSDSSLKFTH VLYNLSPAEL YEQAIKYEKG SFITSNGALA TLSGAKTGRA PRDKRVVRDA
201: TTEDELWWGK GSPNIEMDEH TFMVNRERAV DYLNSLEKVF VNDQYLNWDP ENRIKVRIVS ARAYHSLFMH NMCIRPTQEE LESFGTPDFT IYNAGQFPCN
301: RYTHYMTSST SVDLNLARRE MVILGTQYAG EMKKGLFSVM HYLMPKRRIL SLHSGCNMGK DGDVALFFGL SGTGKTTLST DHNRYLIGDD EHCWTETGVS
401: NIEGGCYAKC VDLSREKEPD IWNAIKFGTV LENVVFDEHT REVDYSDKSV TENTRAAYPI EFIPNAKIPC VGPHPTNVIL LACDAFGVLP PVSKLNLAQT
501: MYHFISGYTA LVAGTEDGIK EPTATFSACF GAAFIMLHPT KYAAMLAEKM KSQGATGWLV NTGWSGGSYG VGNRIKLAYT RKIIDAIHSG SLLKANYKKT
601: EIFGFEIPTE IEGIPSEILD PVNSWSDKKA HKDTLVKLGG LFKKNFEVFA NHKIGVDGKL TEEILAAGPI F

Arabidopsis Description

PCKAPhosphoenolpyruvate carboxykinase (ATP)-like protein [Source:UniProtKB/TrEMBL;Acc:Q0WWL8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.