Factsheet for Solyc12g088160.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008950.2.1
Solyc04g076880.2.1
Solyc10g077010.1.1
Solyc10g081170.1.1
Solyc11g072240.1.1
Solyc12g088160.1.1
Solyc12g099990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37870.1	Solyc01g008950.2.1	AT2G41090.1	17360592
AT4G37870.1	Solyc10g077010.1.1	AT2G41090.1	17360592
AT4G37870.1	Solyc10g081170.1.1	AT2G41090.1	17360592
AT4G37870.1	Solyc11g072240.1.1	AT2G41090.1	17360592
AT4G37870.1	Solyc12g099990.1.1	AT2G41090.1	17360592
AT4G37870.1	Solyc04g076880.2.1	AT4G37870.1	21798944
AT4G37870.1	Solyc12g088160.1.1	AT4G37870.1	21798944
AT4G37870.1	Solyc01g008950.2.1	AT5G21274.1	17360592
AT4G37870.1	Solyc10g077010.1.1	AT5G21274.1	17360592
AT4G37870.1	Solyc10g081170.1.1	AT5G21274.1	17360592
AT4G37870.1	Solyc11g072240.1.1	AT5G21274.1	17360592
AT4G37870.1	Solyc12g099990.1.1	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400041521	Potato	cytosol	94.78	94.2
PGSC0003DMT400005163	Potato	cytosol	93.86	93.28
Solyc04g076880.2.1	Tomato	cytosol, extracellular, nucleus, plastid	85.1	83.69
KRH52864	Soybean	cytosol	46.7	83.06
PGSC0003DMT400005170	Potato	cytosol	43.47	82.03
CDY31619	Canola	cytosol	65.13	79.1
KXG39751	Sorghum	cytosol	78.8	77.85
CDX72658	Canola	cytosol	76.04	77.59
CDX69339	Canola	cytosol	75.73	76.79
TraesCS4D01G220500.1	Wheat	cytosol	77.42	75.45
TraesCS4B01G220200.1	Wheat	cytosol	76.96	74.78
Bra017856.1-P	Field mustard	cytosol	76.19	74.59
Bra011792.1-P	Field mustard	cytosol	76.34	74.29
CDX75681	Canola	cytosol	76.34	74.29
AT4G37870.1	Thale cress	cytosol	75.73	73.47
KRH62155	Soybean	cytosol, nucleus	75.73	73.36
TraesCS4A01G083900.1	Wheat	mitochondrion	77.42	69.81
HORVU4Hr1G062440.2	Barley	cytosol	70.2	67.9
Os10t0204300-01	Rice	cytosol	3.99	54.17
Zm00001d008318_P001	Maize	cytosol	15.67	45.54
GSMUA_Achr4P20850_001	Banana	cytosol	6.91	37.82

Protein Annotations

KEGG:00010+4.1.1.49	KEGG:00020+4.1.1.49	KEGG:00620+4.1.1.49	KEGG:00710+4.1.1.49	Gene3D:2.170.8.10	MapMan:3.10.1
Gene3D:3.40.449.10	Gene3D:3.90.228.20	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004611	GO:GO:0004612	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005975	GO:GO:0006094	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0017076	InterPro:IPR008210	InterPro:IPR013035	UniProt:K4DGN7
HAMAP:MF_00453	InterPro:PEPCK_ATP_CS	InterPro:PEP_carboxykinase_ATP	InterPro:PEP_carboxykinase_C	InterPro:PEP_carboxykinase_N	PFAM:PF01293
PIRSF:PIRSF006294	ScanProsite:PS00532	PANTHER:PTHR30031	PANTHER:PTHR30031:SF4	SUPFAM:SSF53795	SUPFAM:SSF68923
EnsemblPlantsGene:Solyc12g088160.1	EnsemblPlants:Solyc12g088160.1.1	TIGRFAMs:TIGR00224	UniParc:UPI000276A9C2	SEG:seg	:

Description

No Description!

Coordinates

chr12:+:63617671..63621629

Molecular Weight (calculated)

72336.2 Da

IEP (calculated)

7.042

GRAVY (calculated)

-0.397

Length

651 amino acids

Sequence
(BLAST)

001: MAMNNGLAKI ETQKLKEEIC HDDSAVPVKA QTLEELHSLQ VKKSGPNTPM TGIQQPVFGS EADKNKQQLE SISASLASLT RETGPKLVKG DPAKQPETPR
101: VVHASHQHQH QHQHTPQFSN ITDSALKFTH ILYNLSPAEL YEQAIQNEKG SFITSSGALA TLSGAKTGRS PRDKRVVKDE TTSQELWWGK GSPNIEMDEK
201: TFLINRERAV DYLCSLEKVY VNDQFLNWDP MNKLKVRIVS ARAYHSLFMH NMCIRPTPEE LENFGTPDFT IYNAGKFPCN RYTHYMTSST SIDINLARKE
301: MVILGTQYAG EMKKGLFSLM HYLMPKRQIL SLHSGCNMGK DGDVALFFGL SGTGKTTLST DHNRYLIGDD EHCWSDHGVS NIEGGCYAKC IDLSREKEPD
401: IWNAIKFGTV LENVVFEEHI REVDYSDKSV TENTRAAYPI EYIPNAKIPC VGPHPKNVIL LACDAFGVLP PVSKLNLAQT MYHFISGYTA LVAGTEDGIK
501: EPTATFSACF GAAFIMFHPT KYAAMLAEKM QKQGATGWLV NTGWSGGSYG SGSRIKLAHT RKIIDAIHSG ELLNANYTKT EVFGLEIPNE IKGVPSEILD
601: PVNTWPNKNS YKETLLKLGG LFKKNFEVFT NHKIGTDSNL TDEILAAGPN F

Best Arabidopsis Sequence Match ( AT4G37870.1 )
(BLAST)

001: MSAGNGNATN GDGGFSFPKG PVMPKITTGA AKRGSGVCHD DSGPTVNATT IDELHSLQKK RSAPTTPINQ NAAAAFAAVS EEERQKIQLQ SISASLASLT
101: RESGPKVVRG DPAEKKTDGS TTPAYAHGQH HSIFSPATGA VSDSSLKFTH VLYNLSPAEL YEQAIKYEKG SFITSNGALA TLSGAKTGRA PRDKRVVRDA
201: TTEDELWWGK GSPNIEMDEH TFMVNRERAV DYLNSLEKVF VNDQYLNWDP ENRIKVRIVS ARAYHSLFMH NMCIRPTQEE LESFGTPDFT IYNAGQFPCN
301: RYTHYMTSST SVDLNLARRE MVILGTQYAG EMKKGLFSVM HYLMPKRRIL SLHSGCNMGK DGDVALFFGL SGTGKTTLST DHNRYLIGDD EHCWTETGVS
401: NIEGGCYAKC VDLSREKEPD IWNAIKFGTV LENVVFDEHT REVDYSDKSV TENTRAAYPI EFIPNAKIPC VGPHPTNVIL LACDAFGVLP PVSKLNLAQT
501: MYHFISGYTA LVAGTEDGIK EPTATFSACF GAAFIMLHPT KYAAMLAEKM KSQGATGWLV NTGWSGGSYG VGNRIKLAYT RKIIDAIHSG SLLKANYKKT
601: EIFGFEIPTE IEGIPSEILD PVNSWSDKKA HKDTLVKLGG LFKKNFEVFA NHKIGVDGKL TEEILAAGPI F

Arabidopsis Description

PCKAPhosphoenolpyruvate carboxykinase (ATP)-like protein [Source:UniProtKB/TrEMBL;Acc:Q0WWL8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.